Gene family  

Sub-families
ORTHO012146 (16 genes in 13 species)
ORTHO022268 (5 genes in 5 species)
ORTHO053495 (2 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM004017 has 34 genes in 16 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AT1G77250 ath RING/FYVE/PHD-type zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 9 (TAIR:AT3G01460.1); Has 5001 Blast hits to 3477 proteins in 217 species: Archae - 2; Bacteria - 0; Metazoa - 3203; Fungi - 426; Plants - 950; Viruses - 0; Other Eukaryotes - 420 (source: NCBI BLink).;RING/FYVE/PHD-type zinc finger family protein transcript=eq;prot=eq; - 1 No
BD2G40700 bdi histone acetyltransferase activity (Blast2GO) pid=Bradi2g40700.1;tid=Bradi2g40700.1;GeneName=Bradi2g40700;transcript=eq;prot=eq - Bd2 No
BD2G40707 bdi pid=Bradi2g40707.1;tid=Bradi2g40707.1;GeneName=Bradi2g40707;transcript=eq;prot=eq - Bd2 Yes
BD2G57020 bdi H3/H4 histone acetyltransferase activity (Blast2GO) pid=Bradi2g57020.1;tid=Bradi2g57020.1;GeneName=Bradi2g57020;transcript=eq;prot=eq + Bd2 No
BD3G13210 bdi acetyltransferase activity, ubiquitin-protein ligase activity, nucleoside-triphosphatase activity (Blast2GO) pid=Bradi3g13210.1;tid=Bradi3g13210.1;GeneName=Bradi3g13210;transcript=eq;prot=eq - Bd3 No
CP00064G01510 cpa name=evm.TU.supercontig_64.151;pid=evm.TU.supercontig_64.151;prot=eq;transcript=eq + supercontig_64 No
FV2G30490 fve Zinc finger protein ubi-d4 A (xReq A) (probable) transcript=eq;prot=eq;pid=gene10964 + LG2 No
GM06G12450 gma 06 pid=16262672;transcript=eq;prot=eq;name=Glyma06g12450.1 + Gm06 No
GM13G09480 gma 13 pid=16290122;transcript=eq;prot=eq;name=Glyma13g09480.1 - Gm13 No
GM13G09490 gma 13 pid=16290123;transcript=eq;prot=eq;name=Glyma13g09490.1 - Gm13 No
GM14G24920 gma 14 pid=16296004;transcript=eq;prot=eq;name=Glyma14g24920.1 + Gm14 No
GM14G24930 gma 14 pid=16296005;transcript=eq;prot=eq;name=Glyma14g24930.1 + Gm14 No
MD08G016770 mdo transcript=eq;prot=eq;pid=MDP0000318994;tid=MDP0000318994;contig=MDC041183.9 + 8 No
MD15G006930 mdo transcript=eq;prot=eq;pid=MDP0000263717;tid=MDP0000263717;contig=MDC000847.564 - 15 No
ME03087G00020 mes PACid=17985008;RNAname=cassava4.1_022703m;GeneName=cassava4.1_022703m.g;transcript=eq;prot=eq - scaffold03087 No
ME03745G00010 mes PACid=17976576;RNAname=cassava4.1_032305m;GeneName=cassava4.1_032305m.g;transcript=eq;prot=eq - scaffold03745 No
ME07238G00790 mes PACid=17991405;RNAname=cassava4.1_029872m;GeneName=cassava4.1_029872m.g;transcript=eq;prot=eq + scaffold07238 No
MRCC299_02G09490 mrcc299 name=EuGene.0200010007;pid=55630;prot=eq;tid=55630;transcript=eq - Chr_02 No
OS01G36670 osa expressed protein transcript=eq;prot=eq; - 1 No
OS01G66070 osa PHD%2Dfinger domain containing protein, putative transcript=eq;prot=eq; + 1 No
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