Gene family 
- Id
- HOM004015
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
- No subfamilies present
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (2 genes)
- cpa
- Carica papaya (1 gene)
- gma
- Glycine max (3 genes)
- lja
- Lotus japonicus (4 genes)
- mes
- Manihot esculenta (2 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (2 genes)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (2 genes)
The gene family HOM004015 has 34 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : HOM004015
Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL6G18430 | aly | name=fgenesh2_kg.6__1848__AT5G18400.2;pid=488714;prot=eq;tid=488714 | - | scaffold_6 | No | |
| AT5G18362 | ath | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (TAIR:AT5G18400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | transcript=eq;prot=eq; | - | 5 | No |
| AT5G18400 | ath | Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF689 (InterPro:IPR007785); BEST Arabidopsis thaliana protein match is: Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis (TAIR:AT5G18362.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis | transcript=eq;prot=eq; | - | 5 | No |
| BD1G25576 | bdi | pid=Bradi1g25576.1;tid=Bradi1g25576.1;GeneName=Bradi1g25576;transcript=eq;prot=eq | - | Bd1 | No | |
| BD5G25970 | bdi | pid=Bradi5g25970.1;tid=Bradi5g25970.1;GeneName=Bradi5g25970;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00051G00420 | cpa | name=evm.TU.supercontig_51.42;pid=evm.TU.supercontig_51.42;prot=eq;transcript=eq | - | supercontig_51 | No | |
| GM00G00205 | gma | 42 | pid=16242714;transcript=eq;prot=eq;name=Glyma0042s00440.1 | + | scaffold_42 | No |
| GM11G10960 | gma | 11 | pid=16283424;transcript=eq;prot=eq;name=Glyma11g10960.1 | + | Gm11 | No |
| GM12G17560 | gma | 12 | pid=16287777;transcript=eq;prot=eq;name=Glyma12g17560.1 | - | Gm12 | No |
| LJ0G060720 | lja | prot=eq;transcript=eq;scaffold=LjSGA_021652;name=LjSGA_021652.1 | + | LjSGA_021652 | No | |
| LJ0G141460 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_044274;name=LjSGA_044274.1 | - | LjSGA_044274 | No | |
| LJ0G254060 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_084477;name=LjSGA_084477.0.1 | - | LjSGA_084477 | No | |
| LJ0G445780 | lja | partial;prot=eq;transcript=eq;scaffold=LjT32E09;name=LjT32E09.90.nd | - | chr0 | No | |
| ME07035G00900 | mes | PACid=17977200;RNAname=cassava4.1_029989m;GeneName=cassava4.1_029989m.g;transcript=eq;prot=eq | - | scaffold07035 | No | |
| ME08154G00090 | mes | PACid=17960134;RNAname=cassava4.1_013693m;GeneName=cassava4.1_013693m.g;transcript=eq;prot=eq | - | scaffold08154 | No | |
| MRCC299_10G02180 | mrcc299 | name=gw2.10.567.1;pid=74512;prot=eq;tid=74512;transcript=eq | + | Chr_10 | No | |
| MT4G074480 | mtr | Anamorsin homolog (AHRD V1 ***- B7FNA9); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 | transcript=eq;prot=eq;pid=Medtr4g074480.1; | + | 4 | No |
| MT4G108000 | mtr | U11/U12 small nuclear ribonucleoprotein 25 kDa protein (AHRD V1 *--- Q9BV90); contains Interpro domain(s) IPR007785 Protein of unknown function DUF689 | transcript=eq;prot=eq;pid=Medtr4g108000.1; | - | 4 | No |
| OL01G06080 | olu | NULL | name=eugene.0100010613,pid=29219,prot=eq,tid=29219 | + | Chr_1 | No |
| OS04G57810 | osa | GA18008%2DPA, putative, expressed | transcript=eq;prot=eq; | + | 4 | No |