Gene family  

Sub-families
ORTHO006041 (25 genes in 23 species)
ORTHO070725 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM004009 has 34 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G27830 aly name=Al_scaffold_0007_2683;pid=859184;prot=eq;tid=890697 + scaffold_7 Yes
AL8G04620 aly name=fgenesh2_kg.8__323__AT5G44750.2;pid=494507;prot=eq;tid=494507 - scaffold_8 No
AT5G44750 ath Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).;DNA-directed DNA polymerases transcript=eq;prot=eq; + 5 No
BD1G33560 bdi sugar:hydrogen symporter activity (Blast2GO) pid=Bradi1g33560.1;tid=Bradi1g33560.1;GeneName=Bradi1g33560;transcript=eq;prot=eq + Bd1 No
CP00106G01000 cpa name=evm.TU.supercontig_106.100;pid=evm.TU.supercontig_106.100;prot=eq;transcript=eq - supercontig_106 No
CP00106G01010 cpa name=evm.TU.supercontig_106.101;pid=evm.TU.supercontig_106.101;prot=eq;transcript=eq - supercontig_106 No
CR12G14020 cre name=fgenesh2_pg.C_scaffold_20000208;pid=173359;prot=eq;tid=173359;transcript=eq + chromosome_12 No
FV2G04240 fve DNA repair protein REV1 (AIBP80) (probable) transcript=eq;prot=eq;pid=gene22740 + LG2 No
FV4G07230 fve Zinc finger CCCH domain-containing protein 18 (AtC3H18) (probable) transcript=eq;prot=eq;pid=gene29861 + LG4 No
GM01G45490 gma 01 pid=16246425;transcript=eq;prot=eq;name=Glyma01g45490.1 + Gm01 No
MD00G518790 mdo transcript=eq;prot=eq;pid=MDP0000318971;tid=MDP0000318971;contig=MDC043955.5 + MDC043955.5 No
MD15G020730 mdo transcript=eq;prot=eq;pid=MDP0000245102;tid=MDP0000245102;contig=MDC020418.424 - 15 No
ME01158G00060 mes PACid=17969870;RNAname=cassava4.1_032603m;GeneName=cassava4.1_032603m.g;transcript=eq;prot=eq + scaffold01158 No
ME01158G00070 mes PACid=17969873;RNAname=cassava4.1_024172m;GeneName=cassava4.1_024172m.g;transcript=eq;prot=eq + scaffold01158 No
MRCC299_02G00980 mrcc299 name=EuGene.0200010852;pid=56475;prot=eq;tid=56475;transcript=eq - Chr_02 No
MRCC299_02G07500 mrcc299 name=gw2.02.975.1;pid=75899;prot=eq;tid=75899;transcript=eq - Chr_02 No
OL10G00680 olu NULL name=estExt_fgenesh1_pg.C_Chr_100054,pid=25113,prot=eq,tid=25113 + Chr_10 No
OS06G47580 osa REV1, putative, expressed transcript=eq;prot=eq; - 6 No
OSINDICA_00G12030 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC046755; - Scaffold012579 No
OSINDICA_06G43630 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC011925; - Chr06 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier