Gene family  

Sub-families
ORTHO005361 (26 genes in 24 species)
ORTHO035526 (3 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003993 has 34 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G13850 aly name=fgenesh2_kg.8__868__AT5G49970.1;pid=495052;prot=eq;tid=495052 + scaffold_8 No
AT5G49970 ath encodes the bifunctional pyridoxine (pyridoxamine) 5’-phosphate oxidase (PPOX)(EC 1.4.3.5) that is involved in the formation of pyridoxal 5'-phosphate (member of the vitamin B6 group);pyridoxin (pyrodoxamine) 5'-phosphate oxidase transcript=eq;prot=eq; + 5 No
BD3G23340 bdi pyridoxamine-phosphate oxidase activity (Blast2GO) pid=Bradi3g23340.1;tid=Bradi3g23340.1;GeneName=Bradi3g23340;transcript=eq;prot=eq - Bd3 No
CP00036G02020 cpa name=evm.TU.supercontig_36.202;pid=evm.TU.supercontig_36.202;prot=eq;transcript=eq + supercontig_36 No
CR08G04150 cre name=au.g15027_t1;pid=297432;prot=eq;tid=297439;transcript=eq - chromosome_8 No
FV5G20570 fve Apolipoprotein A-I-binding protein (AI-BP), Precursor (similar to) transcript=eq;prot=eq;pid=gene12064 + LG5 No
GM04G09950 gma 04 pid=16255476;transcript=eq;prot=eq;name=Glyma04g09950.1 - Gm04 No
GM06G10000 gma 06 pid=16262379;transcript=eq;prot=eq;name=Glyma06g10000.1 - Gm06 No
LJ3G037140 lja partial;prot=eq;transcript=eq;scaffold=CM0261;name=chr3.CM0261.270.nc - chr3 Yes
MD00G031650 mdo transcript=eq;prot=eq;pid=MDP0000247921;tid=MDP0000247921;contig=MDC001332.392 - MDC001332.392 No
MD00G067760 mdo transcript=eq;prot=eq;pid=MDP0000155620;tid=MDP0000155620;contig=MDC002841.103 + MDC002841.103 Yes
MD00G216810 mdo transcript=eq;prot=eq;pid=MDP0000926890;tid=MDP0000926890;contig=MDC009351.104 - MDC009351.104 Yes
MD01G010140 mdo transcript=eq;prot=eq;pid=MDP0000191503;tid=MDP0000191503;contig=MDC009869.241 + 1 Yes
MD11G017360 mdo transcript=eq;prot=eq;pid=MDP0000249899;tid=MDP0000249899;contig=MDC009086.325 - 11 Yes
MD15G029920 mdo transcript=eq;prot=eq;pid=MDP0000809215;tid=MDP0000809215;contig=MDC008632.301 + 15 No
ME04059G00090 mes PACid=17992558;RNAname=cassava4.1_018171m;GeneName=cassava4.1_018154m.g;transcript=eq;prot=eq + scaffold04059 No
ME06916G02070 mes PACid=17981899;RNAname=cassava4.1_005104m;GeneName=cassava4.1_005104m.g;transcript=eq;prot=eq - scaffold06916 No
MRCC299_12G05040 mrcc299 name=EuGene.1200010006;pid=62834;prot=eq;tid=62834;transcript=eq + Chr_12 No
MT3G100890 mtr Pyridoxine/pyridoxamine 5'-phosphate oxidase (AHRD V1 *-** B0C079); contains Interpro domain(s) IPR000659 Pyridoxamine 5'-phosphate oxidase transcript=eq;prot=eq;pid=Medtr3g100890.1; - 3 No
OL01G03480 olu NULL name=ost_01_015_134,pid=86160,prot=eq,tid=86160 - Chr_1 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier