Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003990 has 34 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G10750 aly name=fgenesh2_kg.7__1105__AT4G30820.3;pid=491672;prot=eq;tid=491672 - scaffold_7 No
AT4G30820 ath cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cdk-activating kinase assembly factor (MAT1) (InterPro:IPR004575), Cdk-activating kinase assembly factor, MAT1 (InterPro:IPR015877); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related transcript=eq;prot=eq; + 4 No
BD1G48110 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi1g48110.1;tid=Bradi1g48110.1;GeneName=Bradi1g48110;transcript=eq;prot=eq - Bd1 No
BD1G78720 bdi ubiquitin-protein ligase activity (Blast2GO) pid=Bradi1g78720.1;tid=Bradi1g78720.1;GeneName=Bradi1g78720;transcript=eq;prot=eq + Bd1 No
CP00199G00230 cpa name=evm.TU.supercontig_199.23;pid=evm.TU.supercontig_199.23;prot=eq;transcript=eq + supercontig_199 No
CR01G13020 cre name=estExt_fgenesh1_pg.C_chromosome_10847;pid=342501;prot=eq;tid=342508;transcript=eq - chromosome_1 No
FV1G02080 fve CDK-activating kinase assembly factor MAT1 (similar to) transcript=eq;prot=eq;pid=gene10120 - LG1 No
GM19G04910 gma 19 pid=16311902;transcript=eq;prot=eq;name=Glyma19g04910.1 + Gm19 No
LJ2G012360 lja partial;prot=eq;transcript=eq;scaffold=CM0338;name=chr2.CM0338.290.nd - chr2 No
MD02G001250 mdo transcript=eq;prot=eq;pid=MDP0000510604;tid=MDP0000510604;contig=MDC002084.202 + 2 No
MD15G008320 mdo transcript=eq;prot=eq;pid=MDP0000217786;tid=MDP0000217786;contig=MDC021889.237 + 15 No
ME03419G00020 mes PACid=17980489;RNAname=cassava4.1_029298m;GeneName=cassava4.1_029298m.g;transcript=eq;prot=eq + scaffold03419 No
MRCC299_12G02040 mrcc299 name=EuGene.1200010314;pid=63142;prot=eq;tid=63142;transcript=eq - Chr_12 No
MT6G006900 mtr CDK-activating kinase assembly factor MAT1 (AHRD V1 *-*- P51949); contains Interpro domain(s) IPR015877 Cdk-activating kinase assembly factor, MAT1 transcript=eq;prot=eq;pid=Medtr6g006900.1; + 6 No
OL11G01970 olu NULL name=eugene.1100010195,pid=26522,prot=eq,tid=26522 - Chr_11 No
OS06G07480 osa CDK%2Dactivating kinase assembly factor MAT1 family protein, expressed transcript=eq;prot=eq; + 6 No
OS11G28350 osa CDK%2Dactivating kinase assembly factor MAT1 family protein, expressed transcript=eq;prot=eq; - 11 No
OSINDICA_06G07040 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC009625; + Chr06 No
OSINDICA_11G19400 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC035118; - Chr11 No
OT11G02140 ota Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor (ISS); name=OT11G02140;protein_id=CAL55819.1;prot=eq - chrom11 No
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