Gene family  

Sub-families
ORTHO049661 (2 genes in 2 species)
ORTHO059657 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM003965 has 34 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G10670 aly name=fgenesh2_kg.6__1059__AT5G10940.1;pid=487925;prot=eq;tid=487925 - scaffold_6 No
AT5G10940 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G45620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; - 5 No
BD1G72086 bdi pid=Bradi1g72086.1;tid=Bradi1g72086.1;GeneName=Bradi1g72086;transcript=eq;prot=eq - Bd1 No
CP00608G00020 cpa name=evm.TU.supercontig_608.2;pid=evm.TU.supercontig_608.2;prot=eq;transcript=eq - supercontig_608 No
CR07G07710 cre name=Chlre2_kg.scaffold_16000182;pid=146091;prot=eq;tid=146091;transcript=eq + chromosome_7 No
FV5G20700 fve WD and tetratricopeptide repeats protein 1 (probable) transcript=eq;prot=eq;pid=gene12077 - LG5 No
GM04G09890 gma 04 pid=16255467;transcript=eq;prot=eq;name=Glyma04g09890.1 + Gm04 No
LJ0G025250 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_012978;name=LjSGA_012978.1 - LjSGA_012978 No
LJ0G102270 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_032803;name=LjSGA_032803.1 - LjSGA_032803 No
LJ0G195710 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_062419;name=LjSGA_062419.1 + LjSGA_062419 No
LJ0G232650 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_076109;name=LjSGA_076109.1 + LjSGA_076109 No
MD00G375220 mdo transcript=eq;prot=eq;pid=MDP0000259769;tid=MDP0000259769;contig=MDC017014.266 + MDC017014.266 No
MD08G018290 mdo transcript=eq;prot=eq;pid=MDP0000917033;tid=MDP0000917033;contig=MDC013715.191 - 8 No
MD08G018300 mdo transcript=eq;prot=eq;pid=MDP0000231125;tid=MDP0000231125;contig=MDC009462.72 - 8 No
MD15G030030 mdo transcript=eq;prot=eq;pid=MDP0000282755;tid=MDP0000282755;contig=MDC008573.596 - 15 No
ME06916G02020 mes PACid=17981811;RNAname=cassava4.1_002306m;GeneName=cassava4.1_002306m.g;transcript=eq;prot=eq + scaffold06916 No
MT3G100690 mtr DDB1- and CUL4-associated factor 6 (AHRD V1 *--- Q9DC22); contains Interpro domain(s) IPR017986 WD40 repeat, region transcript=eq;prot=eq;pid=Medtr3g100690.1; - 3 No
MT5G050630 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g050630.1; - 5 No
MT5G050790 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g050790.1; - 5 No
MT5G079760 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g079760.1; + 5 Yes
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