Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003934 has 34 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 34 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G17110 aly name=scaffold_601774.1;pid=909717;prot=eq;tid=941230 - scaffold_6 No
AT5G17250 ath Alkaline-phosphatase-like family protein; FUNCTIONS IN: transferase activity, catalytic activity; INVOLVED IN: GPI anchor biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase (InterPro:IPR002591), Alkaline-phosphatase-like, core domain (InterPro:IPR017850); BEST Arabidopsis thaliana protein match is: Alkaline-phosphatase-like family protein (TAIR:AT2G22530.1); Has 1431 Blast hits to 1201 proteins in 306 species: Archae - 0; Bacteria - 228; Metazoa - 476; Fungi - 488; Plants - 85; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).;Alkaline-phosphatase-like family protein transcript=eq;prot=eq; - 5 No
BD4G05550 bdi mannose-ethanolamine phosphotransferase activity (Blast2GO) pid=Bradi4g05550.1;tid=Bradi4g05550.1;GeneName=Bradi4g05550;transcript=eq;prot=eq - Bd4 No
CP00080G00330 cpa name=evm.TU.supercontig_80.33;pid=evm.TU.supercontig_80.33;prot=eq;transcript=eq - supercontig_80 No
CP00080G00340 cpa name=evm.TU.supercontig_80.34;pid=evm.TU.supercontig_80.34;prot=eq;transcript=eq - supercontig_80 No
CP00080G00350 cpa name=evm.TU.supercontig_80.35;pid=evm.TU.supercontig_80.35;prot=eq;transcript=eq - supercontig_80 No
CP00080G00370 cpa name=evm.TU.supercontig_80.37;pid=evm.TU.supercontig_80.37;prot=eq;transcript=eq - supercontig_80 No
CR02G04330 cre name=pasa_Sanger_mRNA18628;pid=413904;prot=eq;tid=408990;transcript=eq + chromosome_2 No
FV4G18510 fve GPI ethanolamine phosphate transferase 3 (PIG-O) (probable) transcript=eq;prot=eq;pid=gene22773 + LG4 No
GM13G17720 gma 13 pid=16290642;transcript=eq;prot=eq;name=Glyma13g17720.1 + Gm13 No
GM17G04790 gma 17 pid=16304426;transcript=eq;prot=eq;name=Glyma17g04790.1 - Gm17 No
LJ0G094600 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_030679;name=LjSGA_030679.1 + LjSGA_030679 No
LJ0G129890 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_040692;name=LjSGA_040692.1 - LjSGA_040692 No
LJ0G196090 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_062537;name=LjSGA_062537.1 - LjSGA_062537 No
LJ0G398740 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_146966;name=LjSGA_146966.1 - LjSGA_146966 No
MD00G147020 mdo transcript=eq;prot=eq;pid=MDP0000279892;tid=MDP0000279892;contig=MDC006326.186 - MDC006326.186 No
MD04G005240 mdo transcript=eq;prot=eq;pid=MDP0000256899;tid=MDP0000256899;contig=MDC007239.507 - 4 No
ME05280G00070 mes PACid=17970930;RNAname=cassava4.1_001034m;GeneName=cassava4.1_001034m.g;transcript=ne;prot=eq - scaffold05280 No
MRCC299_01G01720 mrcc299 name=MSI_PierreAnnot2.00138;pid=113927;prot=eq;tid=113927;transcript=eq + Chr_01 No
MT2G033130 mtr Genomic DNA chromosome 5 P1 clone MKP11 (AHRD V1 ***- Q9FFI6_ARATH) transcript=eq;prot=eq;pid=Medtr2g033130.1; - 2 No
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