Gene family  

Sub-families
ORTHO004698 (27 genes in 24 species)
ORTHO030119 (4 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (5 genes)



The gene family HOM003907 has 35 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G35380 aly name=scaffold_703714.1;pid=915972;prot=eq;tid=947485 - scaffold_7 No
AL8G27700 aly name=fgenesh2_kg.8__2125__AT5G61500.1;pid=496309;prot=eq;tid=496309 - scaffold_8 No
AT5G61500 ath ATG3; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135), Autophagy-related protein 3, C-terminal (InterPro:IPR019461), Autophagy-related protein 3, N-terminal (InterPro:IPR007134); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;autophagy 3 (APG3) transcript=eq;prot=eq; - 5 No
BD3G33350 bdi small conjugating protein ligase activity (Blast2GO) pid=Bradi3g33350.1;tid=Bradi3g33350.1;GeneName=Bradi3g33350;transcript=eq;prot=eq - Bd3 No
CP00016G01710 cpa name=evm.TU.supercontig_16.171;pid=evm.TU.supercontig_16.171;prot=eq;transcript=eq - supercontig_16 No
CR02G06120 cre name=estExt_fgenesh2_pg.C_50319;pid=186904;prot=eq;tid=186904;transcript=eq - chromosome_2 No
FV7G13810 fve Autophagy-related protein 3 (Protein autophagy 3) (similar to) transcript=eq;prot=eq;pid=gene04831 + LG7 No
GM09G36540 gma 09 pid=16277411;transcript=eq;prot=eq;name=Glyma09g36540.1 - Gm09 No
GM12G00830 gma 12 pid=16285887;transcript=eq;prot=eq;name=Glyma12g00830.1 + Gm12 No
LJ0G142680 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_044662;name=LjSGA_044662.1 + LjSGA_044662 No
MD06G009660 mdo transcript=eq;prot=eq;pid=MDP0000320892;tid=MDP0000320892;contig=MDC017858.191 + 6 No
MD06G009670 mdo transcript=eq;prot=eq;pid=MDP0000334722;tid=MDP0000334722;contig=MDC033078.13 + 6 No
ME01127G00320 mes PACid=17964601;RNAname=cassava4.1_012206m;GeneName=cassava4.1_012206m.g;transcript=eq;prot=eq + scaffold01127 No
MRCC299_08G00980 mrcc299 name=EuGene.0800010097;pid=60529;prot=eq;tid=60529;transcript=eq - Chr_08 No
OL06G03770 olu NULL name=fgenesh1_pm.C_Chr_6000073,pid=12653,prot=eq,tid=12653 - Chr_6 No
OS01G10290 osa autophagy%2Drelated protein 3, putative, expressed transcript=eq;prot=eq; - 1 No
OS10G41110 osa autophagy%2Drelated protein 3, putative, expressed transcript=eq;prot=eq; - 10 No
OSINDICA_01G09360 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC000654; - Chr01 No
OSINDICA_10G31390 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031684; - Chr10 No
OSINDICA_10G31430 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC031688; - Chr10 No
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