Gene family  

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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003885 has 35 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G38960 aly name=fgenesh2_kg.3__3408__AT2G18040.1;pid=480707;prot=eq;tid=480707 + scaffold_3 No
AT2G18040 ath phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds;peptidylprolyl cis/trans isomerase, NIMA-interacting 1 transcript=eq;prot=eq; + 2 No
BD5G01720 bdi phosphoserine binding, phosphothreonine binding (Blast2GO) pid=Bradi5g01720.1;tid=Bradi5g01720.1;GeneName=Bradi5g01720;transcript=eq;prot=eq + Bd5 No
CP00006G02260 cpa name=evm.TU.supercontig_6.227;pid=evm.TU.supercontig_6.227;prot=eq;transcript=eq - supercontig_6 No
CR16G04910 cre name=estExt_fgenesh1_pg.C_280053;pid=34069;prot=eq;tid=34069;transcript=eq - chromosome_16 No
FV6G34120 fve Peptidyl-prolyl cis-trans isomerase 1 (similar to) transcript=eq;prot=eq;pid=gene21969 - LG6 No
GM02G05560 gma 02 pid=16247085;transcript=eq;prot=eq;name=Glyma02g05560.1 + Gm02 No
GM09G06110 gma 09 pid=16274946;transcript=eq;prot=eq;name=Glyma09g06110.1 - Gm09 No
GM16G24140 gma 16 pid=16302719;transcript=eq;prot=eq;name=Glyma16g24140.1 + Gm16 No
LJ0G048450 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_018658;name=LjSGA_018658.1 - LjSGA_018658 No
MD00G129410 mdo transcript=eq;prot=eq;pid=MDP0000325328;tid=MDP0000325328;contig=MDC005515.251 - MDC005515.251 No
MD00G178600 mdo transcript=eq;prot=eq;pid=MDP0000177180;tid=MDP0000177180;contig=MDC007657.717 - MDC007657.717 No
ME06512G00950 mes PACid=17966464;RNAname=cassava4.1_019444m;GeneName=cassava4.1_019444m.g;transcript=eq;prot=eq - scaffold06512 No
ME07520G02490 mes PACid=17979384;RNAname=cassava4.1_019435m;GeneName=cassava4.1_019435m.g;transcript=eq;prot=eq - scaffold07520 No
MRCC299_10G05410 mrcc299 name=e_gw2.10.525.1;pid=85730;prot=eq;tid=85730;transcript=eq - Chr_10 No
MT8G076070 mtr Peptidyl-prolyl cis-trans isomerase Pin1 (AHRD V1 **** Q94G00); contains Interpro domain(s) IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type transcript=eq;prot=eq;pid=Medtr8g076070.1; + 8 No
OL16G00110 olu NULL name=eugene.1600010011,pid=27955,prot=eq,tid=27955 + Chr_16 No
OS04G56800 osa peptidyl%2Dprolyl cis%2Dtrans isomerase, putative, expressed transcript=eq;prot=eq; - 4 No
OSINDICA_00G15690 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC046254; - Supscaffold293 No
OSINDICA_00G35480 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFSC048899; + Scaffold024904 No
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