Gene family  

Sub-families
ORTHO004237 (27 genes in 23 species)
ORTHO035468 (3 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003858 has 35 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G19220 aly name=fgenesh2_kg.1__2002__AT3G10110.1;pid=472048;prot=eq;tid=472048 + scaffold_1 No
AT1G18320 ath Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT3G10110.1); Has 671 Blast hits to 671 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 261; Fungi - 229; Plants - 123; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein transcript=ne;prot=eq; + 1 No
AT3G10110 ath maternal effect embryo arrest 67 (MEE67); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrial inner membrane, chloroplast, mitochondrial inner membrane presequence translocase complex; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (TAIR:AT1G18320.1); Has 680 Blast hits to 680 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 258; Fungi - 229; Plants - 130; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).;Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein transcript=eq;prot=eq; + 3 No
BD1G65220 bdi P-P-bond-hydrolysis-driven protein transmembrane transporter activity (Blast2GO) pid=Bradi1g65220.1;tid=Bradi1g65220.1;GeneName=Bradi1g65220;transcript=eq;prot=eq + Bd1 No
CP00002G03560 cpa name=evm.TU.supercontig_2.356;pid=evm.TU.supercontig_2.356;prot=eq;transcript=eq - supercontig_2 No
CR01G04530 cre name=estExt_fgenesh2_pg.C_10205;pid=189783;prot=eq;tid=189783;transcript=eq + chromosome_1 No
GM09G35780 gma 09 pid=16277323;transcript=eq;prot=eq;name=Glyma09g35780.1 - Gm09 No
GM12G01980 gma 12 pid=16286044;transcript=eq;prot=eq;name=Glyma12g01980.1 - Gm12 No
LJ3G036040 lja prot=eq;transcript=eq;scaffold=CM0127;name=chr3.CM0127.370.nc - chr3 No
MD00G037980 mdo transcript=eq;prot=eq;pid=MDP0000256389;tid=MDP0000256389;contig=MDC001616.386 - MDC001616.386 No
MD00G144120 mdo transcript=eq;prot=eq;pid=MDP0000179175;tid=MDP0000179175;contig=MDC006187.427 + MDC006187.427 No
MD00G144210 mdo transcript=eq;prot=eq;pid=MDP0000352200;tid=MDP0000352200;contig=MDC006187.448 - MDC006187.448 No
MD03G004660 mdo transcript=eq;prot=eq;pid=MDP0000208970;tid=MDP0000208970;contig=MDC017633.250 + 3 No
MD10G025440 mdo transcript=eq;prot=eq;pid=MDP0000267389;tid=MDP0000267389;contig=MDC001853.482 + 10 No
MD11G005060 mdo transcript=eq;prot=eq;pid=MDP0000146867;tid=MDP0000146867;contig=MDC001616.409 + 11 No
MD11G005110 mdo transcript=eq;prot=eq;pid=MDP0000257242;tid=MDP0000257242;contig=MDC006187.263 + 11 No
ME03741G00130 mes PACid=17987149;RNAname=cassava4.1_018769m;GeneName=cassava4.1_018769m.g;transcript=eq;prot=eq + scaffold03741 No
ME06749G00040 mes PACid=17977757;RNAname=cassava4.1_017605m;GeneName=cassava4.1_017605m.g;transcript=eq;prot=eq - scaffold06749 No
MRCC299_05G03250 mrcc299 name=gw2.05.669.1;pid=73513;prot=eq;tid=73513;transcript=eq - Chr_05 No
MT4G077950 mtr Mitochondrial import inner membrane translocase subunit TIM22 (AHRD V1 *-*- Q6BT35); contains Interpro domain(s) IPR003397 Mitochondrial inner membrane translocase complex, subunit Tim17/22 transcript=eq;prot=eq;pid=Medtr4g077950.1; + 4 No
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