Gene family  

Sub-families
ORTHO043221 (2 genes in 2 species)
ORTHO053559 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003833 has 35 genes in 23 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G17240 aly name=fgenesh2_kg.3__1776__AT3G16220.1;pid=479075;prot=eq;tid=479075 + scaffold_3 No
AL3G17250 aly name=fgenesh1_pg.C_scaffold_3001512;pid=341749;prot=eq;tid=341749 + scaffold_3 No
AT3G16220 ath Predicted eukaryotic LigT; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16230.3); Has 246 Blast hits to 244 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 11; Plants - 39; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).;Predicted eukaryotic LigT transcript=eq;prot=eq; + 3 No
AT3G16230 ath Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1).;Predicted eukaryotic LigT transcript=eq;prot=eq; + 3 No
BD2G07800 bdi KH domain-containing protein similar to RNA binding/catalytic protein, [Arabidopsis thaliana] AT3G16230 pid=Bradi2g07800.1;tid=Bradi2g07800.1;GeneName=Bradi2g07800;transcript=eq;prot=eq + Bd2 No
CP00109G00350 cpa name=evm.TU.supercontig_109.35;pid=evm.TU.supercontig_109.35;prot=eq;transcript=eq - supercontig_109 No
CP32037G00010 cpa name=evm.TU.contig_32037.1;pid=evm.TU.contig_32037.1;prot=eq;transcript=eq - contig_32037 No
CR01G01650 cre name=au.g1131_t1;pid=282592;prot=eq;tid=282599;transcript=eq - chromosome_1 No
FV0G13340 fve hypothetical protein transcript=eq;prot=eq;pid=gene07229 - scf0513160 No
FV6G15690 fve hypothetical protein transcript=eq;prot=eq;pid=gene25769 - LG6 No
GM13G43230 gma 13 pid=16293613;transcript=eq;prot=eq;name=Glyma13g43230.1 + Gm13 No
GM13G43240 gma 13 pid=16293614;transcript=eq;prot=eq;name=Glyma13g43240.1 + Gm13 No
GM15G02100 gma 15 pid=16297337;transcript=eq;prot=eq;name=Glyma15g02100.1 - Gm15 No
GM15G02110 gma 15 pid=16297338;transcript=eq;prot=eq;name=Glyma15g02110.1 - Gm15 Yes
LJ0G100100 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_032143;name=LjSGA_032143.1 - LjSGA_032143 No
LJ0G189260 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_060219;name=LjSGA_060219.1 - LjSGA_060219 No
MD00G390940 mdo transcript=eq;prot=eq;pid=MDP0000949412;tid=MDP0000949412;contig=MDC017714.153 - MDC017714.153 No
ME07351G00450 mes PACid=17984117;RNAname=cassava4.1_006017m;GeneName=cassava4.1_006017m.g;transcript=eq;prot=eq - scaffold07351 No
MRCC299_16G01320 mrcc299 name=gw2.16.176.1;pid=71934;prot=eq;tid=71934;transcript=eq - Chr_16 No
MT2G101350 mtr Activating signal cointegrator 1 complex subunit 1 (AHRD V1 *-*- Q9D8Z1); contains Interpro domain(s) IPR018111 K Homology, type 1, subgroup transcript=eq;prot=eq;pid=Medtr2g101350.1; + 2 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier