Gene family  

Sub-families
ORTHO004828 (26 genes in 23 species)
ORTHO047790 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (1 gene)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)



The gene family HOM003831 has 35 genes in 23 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18720 aly name=fgenesh2_kg.1__1942__AT1G17760.1;pid=471988;prot=eq;tid=471988 - scaffold_1 No
AT1G17760 ath Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. RNA 3′-end–processing factor of antisense FLC transcript. Mediates silencing of the floral repressor gene FLC.;Tetratricopeptide repeat (TPR)-like superfamily protein transcript=eq;prot=eq; - 1 No
BD4G03980 bdi pid=Bradi4g03980.1;tid=Bradi4g03980.1;GeneName=Bradi4g03980;transcript=eq;prot=eq - Bd4 No
CP00111G00440 cpa name=evm.TU.supercontig_111.44;pid=evm.TU.supercontig_111.44;prot=eq;transcript=eq - supercontig_111 No
CP00111G00450 cpa name=evm.TU.supercontig_111.45;pid=evm.TU.supercontig_111.45;prot=eq;transcript=eq - supercontig_111 No
CP00111G00460 cpa name=evm.TU.supercontig_111.46;pid=evm.TU.supercontig_111.46;prot=eq;transcript=eq - supercontig_111 No
CR12G04600 cre name=Chlre2_kg.scaffold_11000108;pid=144563;prot=eq;tid=144563;transcript=eq + chromosome_12 No
CR12G04620 cre name=pasa_Sanger_mRNA6924;pid=423561;prot=eq;tid=397174;transcript=eq + chromosome_12 Yes
FV0G16020 fve Cleavage stimulation factor 77 kDa subunit (CSTF 77 kDa subunit) (probable) transcript=eq;prot=eq;pid=gene05275 + scf0513160 No
FV2G23760 fve E3 ubiquitin-protein ligase MARCH6 (MARCH-VI) (similar to) transcript=eq;prot=eq;pid=gene02138 - LG2 No
FV5G27480 fve Cleavage stimulation factor 77 kDa subunit (CSTF 77 kDa subunit) (probable) transcript=eq;prot=eq;pid=gene29296 - LG5 No
GM19G14930 gma 19 pid=16312417;transcript=eq;prot=eq;name=Glyma19g14930.1 - Gm19 No
LJ0G059510 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_021348;name=LjSGA_021348.1 + LjSGA_021348 No
LJ0G194820 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_062105;name=LjSGA_062105.1 - LjSGA_062105 No
LJ0G253410 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_084228;name=LjSGA_084228.1 + LjSGA_084228 No
MD00G511690 mdo transcript=eq;prot=eq;pid=MDP0000227962;tid=MDP0000227962;contig=MDC035152.6 + MDC035152.6 No
MD00G513770 mdo transcript=eq;prot=eq;pid=MDP0000226614;tid=MDP0000226614;contig=MDC037457.4 - MDC037457.4 No
MD00G515440 mdo transcript=eq;prot=eq;pid=MDP0000226573;tid=MDP0000226573;contig=MDC039875.9 - MDC039875.9 No
ME05459G00010 mes PACid=17991247;RNAname=cassava4.1_015628m;GeneName=cassava4.1_015628m.g;transcript=eq;prot=eq - scaffold05459 No
ME05459G00020 mes PACid=17991246;RNAname=cassava4.1_026680m;GeneName=cassava4.1_026680m.g;transcript=eq;prot=eq - scaffold05459 No
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