Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM003801 has 35 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 35 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G26060 aly name=fgenesh2_kg.7__2607__AT4G17020.2;pid=493174;prot=eq;tid=493174 + scaffold_7 No
AT4G17020 ath transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598).;transcription factor-related transcript=eq;prot=eq; - 4 No
BD1G30300 bdi pid=Bradi1g30300.1;tid=Bradi1g30300.1;GeneName=Bradi1g30300;transcript=eq;prot=eq - Bd1 No
BD5G26360 bdi pid=Bradi5g26360.1;tid=Bradi5g26360.1;GeneName=Bradi5g26360;transcript=eq;prot=eq + Bd5 No
CP00027G00560 cpa name=evm.TU.supercontig_27.57;pid=evm.TU.supercontig_27.57;prot=eq;transcript=eq + supercontig_27 No
CR09G03620 cre name=estExt_gwp_1W.C_250080;pid=138157;prot=eq;tid=138157;transcript=eq - chromosome_9 No
FV3G16000 fve RNA polymerase II transcription factor B subunit 2 (probable) transcript=eq;prot=eq;pid=gene02416 + LG3 No
FV3G16010 fve General transcription factor IIH subunit 4 (probable) transcript=eq;prot=eq;pid=gene02417 + LG3 No
GM03G27480 gma 03 pid=16252508;transcript=eq;prot=eq;name=Glyma03g27480.1 - Gm03 No
GM07G31520 gma 07 pid=16268391;transcript=eq;prot=eq;name=Glyma07g31520.1 + Gm07 No
GM13G24920 gma 13 pid=16291470;transcript=eq;prot=eq;name=Glyma13g24920.1 - Gm13 No
LJ0G125690 lja prot=eq;transcript=eq;scaffold=LjSGA_039481;name=LjSGA_039481.1 + LjSGA_039481 No
LJ0G131360 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_041104;name=LjSGA_041104.1 - LjSGA_041104 No
MD00G193660 mdo transcript=eq;prot=eq;pid=MDP0000281875;tid=MDP0000281875;contig=MDC008319.392 - MDC008319.392 No
MD10G023790 mdo transcript=eq;prot=eq;pid=MDP0000288574;tid=MDP0000288574;contig=MDC010150.221 + 10 No
ME08500G00060 mes PACid=17984982;RNAname=cassava4.1_007492m;GeneName=cassava4.1_007492m.g;transcript=eq;prot=eq + scaffold08500 No
MRCC299_07G01160 mrcc299 name=gw2.07.195.1;pid=68288;prot=eq;tid=68288;transcript=eq + Chr_07 No
MT0G23970 mtr General transcription factor IIH subunit 4 (AHRD V1 **** P60027); contains Interpro domain(s) IPR004598 Transcription factor Tfb2 transcript=eq;prot=eq;pid=AC233659_19.1; - AC233659.1 No
MT3G072660 mtr General transcription factor IIH subunit 4 (AHRD V1 **** P60027); contains Interpro domain(s) IPR004598 Transcription factor Tfb2 transcript=eq;prot=eq;pid=Medtr3g072660.1; + 3 No
OL10G03200 olu NULL name=e_gwEuk.10.193.1,pid=37913,prot=eq,tid=37913 + Chr_10 No
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