Gene family  

Sub-families
ORTHO002613 (31 genes in 24 species)
ORTHO023718 (5 genes in 5 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (3 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003780 has 36 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12720 aly name=fgenesh2_kg.1__1339__AT1G12370.2;pid=471385;prot=eq;tid=471385 - scaffold_1 No
AT1G12370 ath encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele;photolyase 1 transcript=eq;prot=eq; - 1 No
BD3G22580 bdi deoxyribodipyrimidine photo-lyase activity (Blast2GO) pid=Bradi3g22580.1;tid=Bradi3g22580.1;GeneName=Bradi3g22580;transcript=eq;prot=eq - Bd3 No
CP00029G00800 cpa name=evm.TU.supercontig_29.80;pid=evm.TU.supercontig_29.80;prot=eq;transcript=eq + supercontig_29 No
CR02G09670 cre name=Chlre2_kg.scaffold_79000047;pid=154289;prot=eq;tid=154289;transcript=eq + chromosome_2 No
FV5G00900 fve Deoxyribodipyrimidine photo-lyase (similar to) transcript=eq;prot=eq;pid=gene32300 - LG5 No
FV5G00920 fve Deoxyribodipyrimidine photo-lyase (similar to) transcript=eq;prot=eq;pid=gene32302 - LG5 No
GM01G42150 gma 01 pid=16246023;transcript=eq;prot=eq;name=Glyma01g42150.1 - Gm01 No
GM11G03220 gma 11 pid=16282512;transcript=eq;prot=eq;name=Glyma11g03220.1 + Gm11 No
LJ2G026990 lja partial;prot=eq;transcript=eq;scaffold=CM0304;name=chr2.CM0304.20.nd - chr2 No
MD04G004360 mdo transcript=eq;prot=eq;pid=MDP0000209470;tid=MDP0000209470;contig=MDC016204.200 + 4 No
ME08154G00010 mes PACid=17960130;RNAname=cassava4.1_025327m;GeneName=cassava4.1_025327m.g;transcript=eq;prot=eq + scaffold08154 No
MRCC299_01G03770 mrcc299 name=EuGene.0100010395;pid=55168;prot=eq;tid=55168;transcript=eq + Chr_01 No
MRCC299_05G03610 mrcc299 name=EuGene.0500010362;pid=58629;prot=eq;tid=58629;transcript=eq + Chr_05 No
MRCC299_06G03920 mrcc299 name=gw2.06.230.1;pid=67761;prot=eq;tid=67761;transcript=eq + Chr_06 No
MT5G011780 mtr CPD photolyase (AHRD V1 ***- B1B538_SOYBN); contains Interpro domain(s) IPR008148 DNA photolyase, class 2 transcript=eq;prot=eq;pid=Medtr5g011780.1; + 5 No
OL03G05580 olu NULL name=eugene.0300010562,pid=30886,prot=eq,tid=30886 - Chr_3 No
OL05G02310 olu NULL name=estExt_GenewiseEukaryote.C_Chr_50176,pid=45715,prot=eq,tid=45715 + Chr_5 No
OL13G01600 olu NULL name=e_gwEuk.13.133.1,pid=41733,prot=eq,tid=41733 + Chr_13 No
OL21G01380 olu NULL name=e_gwEuk.21.73.1,pid=36787,prot=eq,tid=36787 - Chr_21 No
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