Gene family  

Sub-families
ORTHO004565 (27 genes in 24 species)
ORTHO039873 (3 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003747 has 36 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G24560 aly name=fgenesh2_kg.6__2446__AT5G24490.1;pid=489312;prot=eq;tid=489312 + scaffold_6 No
AT5G24490 ath 30S ribosomal protein, putative; FUNCTIONS IN: structural constituent of ribosome, binding; INVOLVED IN: translation, primary metabolic process; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S30Ae/sigma 54 modulation protein (InterPro:IPR003489); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;30S ribosomal protein, putative transcript=eq;prot=eq; + 5 No
BD1G00980 bdi pid=Bradi1g00980.1;tid=Bradi1g00980.1;GeneName=Bradi1g00980;transcript=eq;prot=eq - Bd1 No
CP00003G01570 cpa name=evm.TU.supercontig_3.157;pid=evm.TU.supercontig_3.157;prot=eq;transcript=eq + supercontig_3 No
CR05G01500 cre name=Chlre2_kg.scaffold_36000084;pid=150956;prot=eq;tid=150956;transcript=eq - chromosome_5 No
FV7G34840 fve 30S ribosomal protein 1, chloroplastic (PSRP-1), Precursor (putative) transcript=eq;prot=eq;pid=gene12455 + LG7 No
GM04G40650 gma 04 pid=16257421;transcript=eq;prot=eq;name=Glyma04g40650.1 + Gm04 No
GM06G14140 gma 06 pid=16262899;transcript=eq;prot=eq;name=Glyma06g14140.1 - Gm06 No
LJ0G104550 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_033380;name=LjSGA_033380.1 - LjSGA_033380 No
LJ0G184890 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_058593;name=LjSGA_058593.2 + LjSGA_058593 No
MD00G253230 mdo transcript=eq;prot=eq;pid=MDP0000398785;tid=MDP0000398785;contig=MDC010888.189 + MDC010888.189 No
MD07G020680 mdo transcript=eq;prot=eq;pid=MDP0000248766;tid=MDP0000248766;contig=MDC004459.234 - 7 No
ME02960G00550 mes PACid=17967288;RNAname=cassava4.1_012578m;GeneName=cassava4.1_012578m.g;transcript=eq;prot=eq - scaffold02960 No
MRCC299_13G04130 mrcc299 name=est_cluster_kg.Chr_13__87__3202368:49;pid=109404;prot=eq;tid=109404;transcript=eq - Chr_13 No
MT3G092720 mtr 30S ribosomal protein 1, chloroplastic (AHRD V1 ***- P19954); contains Interpro domain(s) IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein transcript=eq;prot=eq;pid=Medtr3g092720.1; - 3 No
OL20G01220 olu NULL name=eugene.2000010122,pid=29416,prot=eq,tid=29416 - Chr_20 No
OS03G63950 osa plastid%2Dspecific 30S ribosomal protein 1, chloroplast precursor, putative, expressed transcript=eq;prot=eq; + 3 No
OT14G01420 ota chloroplast-specific ribosomal protein (ISS); name=OT14G01420;protein_id=CAL56888.1;prot=eq - chrom14 No
PP00033G00030 ppa NULL name=e_gw1.33.113.1,pid=120515,prot=eq,tid=120515 - scaffold_33 No
PP00191G00410 ppa NULL name=estExt_Genewise1.C_1910051,pid=220250,prot=eq,tid=220250 - scaffold_191 No
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