Gene family  

Sub-families
ORTHO003805 (28 genes in 25 species)
ORTHO029511 (4 genes in 4 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003707 has 36 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G26980 aly name=scaffold_202765.1;pid=895691;prot=eq;tid=927204 - scaffold_2 No
AT1G78010 ath tRNA modification GTPase, putative; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: small GTPase mediated signal transduction, tRNA modification; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), tRNA modification GTPase TrmE (InterPro:IPR004520), GTP-binding protein TrmE, N-terminal (InterPro:IPR018948), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G12080.1); Has 37224 Blast hits to 31482 proteins in 3092 species: Archae - 387; Bacteria - 27903; Metazoa - 467; Fungi - 287; Plants - 322; Viruses - 0; Other Eukaryotes - 7858 (source: NCBI BLink).;tRNA modification GTPase, putative transcript=eq;prot=eq; + 1 No
BD3G35517 bdi pid=Bradi3g35517.1;tid=Bradi3g35517.1;GeneName=Bradi3g35517;transcript=eq;prot=eq + Bd3 No
CP00066G00830 cpa name=evm.TU.supercontig_66.83;pid=evm.TU.supercontig_66.83;prot=eq;transcript=eq - supercontig_66 No
CR01G14230 cre name=e_gwW.42.6.1;pid=121098;prot=eq;tid=121098;transcript=eq - chromosome_1 No
FV5G18690 fve tRNA modification GTPase mnmE (probable) transcript=eq;prot=eq;pid=gene22076 + LG5 No
GM04G11560 gma 04 pid=16255650;transcript=eq;prot=eq;name=Glyma04g11560.1 - Gm04 No
GM06G11130 gma 06 pid=16262516;transcript=eq;prot=eq;name=Glyma06g11130.1 - Gm06 No
LJ0G316440 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_110636;name=LjSGA_110636.1 - LjSGA_110636 No
MD00G013520 mdo transcript=eq;prot=eq;pid=MDP0000165196;tid=MDP0000165196;contig=MDC000558.161 + MDC000558.161 Yes
MD00G240220 mdo transcript=eq;prot=eq;pid=MDP0000542815;tid=MDP0000542815;contig=MDC010409.267 + MDC010409.267 No
MD00G266850 mdo transcript=eq;prot=eq;pid=MDP0000290966;tid=MDP0000290966;contig=MDC011441.302 - MDC011441.302 No
MD00G266860 mdo transcript=eq;prot=eq;pid=MDP0000250703;tid=MDP0000250703;contig=MDC011441.314 - MDC011441.314 No
MD06G019680 mdo transcript=eq;prot=eq;pid=MDP0000126844;tid=MDP0000126844;contig=MDC012172.316 + 6 No
ME00206G00140 mes PACid=17972113;RNAname=cassava4.1_023747m;GeneName=cassava4.1_023747m.g;transcript=eq;prot=eq - scaffold00206 Yes
ME12455G00560 mes PACid=17971823;RNAname=cassava4.1_028292m;GeneName=cassava4.1_028292m.g;transcript=eq;prot=eq - scaffold12455 No
MRCC299_08G01240 mrcc299 name=EuGene.0800010123;pid=60555;prot=eq;tid=60555;transcript=eq - Chr_08 No
MT0G40890 mtr tRNA modification GTPase mnmE (AHRD V1 ***- Q8KPU2); contains Interpro domain(s) IPR004520 tRNA modification GTPase TrmE transcript=eq;prot=eq;pid=CU651589_4.1; + CU651589.4 No
OL03G05340 olu NULL name=e_gwEuk.3.265.1,pid=33876,prot=eq,tid=33876 + Chr_3 No
OL06G04050 olu NULL name=estExt_Genewise_ext.C_Chr_60325,pid=49818,prot=eq,tid=49818 + Chr_6 No
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