Gene family 
- Id
- HOM003678
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO004720 (27 genes in 18 species)
ORTHO034702 (3 genes in 3 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- ath
- Arabidopsis thaliana (2 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- gma
- Glycine max (3 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (2 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (1 gene)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (1 gene)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (1 gene)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (5 genes)
The gene family HOM003678 has 36 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM003678
Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AT2G07727 | ath | Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal; FUNCTIONS IN: electron carrier activity, oxidoreductase activity; INVOLVED IN: respiratory electron transport chain; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome b/b6, C-terminal (InterPro:IPR005798), Cytochrome b/b6 (InterPro:IPR016175), Di-haem cytochrome, transmembrane (InterPro:IPR016174), Cytochrome b/b6, N-terminal (InterPro:IPR005797); BEST Arabidopsis thaliana protein match is: apocytochrome b (TAIR:ATMG00220.1); Has 180948 Blast hits to 180662 proteins in 32826 species: Archae - 150; Bacteria - 2756; Metazoa - 167905; Fungi - 1359; Plants - 1860; Viruses - 0; Other Eukaryotes - 6918 (source: NCBI BLink).;Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal | transcript=eq;prot=eq; | + | 2 | No |
| ATMG00220 | ath | Mitochondrial apocytochrome b (cob) gene encodes a subunit of the ubiquinol-cytochrome c oxidoreductase and is part of a 5 kb transcript. The transcript also contains a pseudogene for ribosomal protein S14 called RPS15 and a tRNA(Ser) gene. Both the Cob and RPS15 genes are edited in the transcript.;apocytochrome b | transcript=eq;prot=eq; | + | mitochondrial | No |
| CRMG00100 | cre | cob;apocytochrome b;protein_id=AAC39350.1; | + | mitochondrial | No | |
| GM00G00730 | gma | 405 | pid=16254287;transcript=eq;prot=eq;name=Glyma0405s00200.1 | - | scaffold_405 | No |
| GM05G18370 | gma | 05 | pid=16259081;transcript=eq;prot=eq;name=Glyma05g18370.1 | + | Gm05 | No |
| GM07G12630 | gma | 07 | pid=16267086;transcript=eq;prot=eq;name=Glyma07g12630.1 | - | Gm07 | No |
| LJ0G003040 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_003899;name=LjSGA_003899.1 | + | LjSGA_003899 | No | |
| LJ0G003050 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_003900;name=LjSGA_003900.1 | + | LjSGA_003900 | No | |
| LJ0G031600 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_014544;name=LjSGA_014544.2.1 | - | LjSGA_014544 | No | |
| LJ4G012810 | lja | partial;prot=eq;transcript=eq;scaffold=CM0131;name=chr4.CM0131.460.nd | + | chr4 | No | |
| MD00G116520 | mdo | transcript=eq;prot=eq;pid=MDP0000800216;tid=MDP0000800216;contig=MDC004970.368 | - | MDC004970.368 | No | |
| MD00G412300 | mdo | transcript=eq;prot=eq;pid=MDP0000758416;tid=MDP0000758416;contig=MDC018770.180 | - | MDC018770.180 | No | |
| MRCC299_MG00300 | mrcc299 | cob;apocytochrome B;protein_id=ACO55597.1; | - | mitochondrial | No | |
| MT1G006200 | mtr | Cytochrome b (Fragment) (AHRD V1 ***- Q9T5A4_SOLTU); contains Interpro domain(s) IPR016175 Cytochrome b/b6 | transcript=eq;prot=eq;pid=Medtr1g006200.1; | + | 1 | No |
| MT5G020030 | mtr | Cytochrome b (Fragment) (AHRD V1 *-*- A7J1B4_CALOL); contains Interpro domain(s) IPR016175 Cytochrome b/b6 | transcript=eq;prot=eq;pid=Medtr5g020030.1; | - | 5 | No |
| OSINDICA_MG00600 | osaindica | cob;apocytochrome b;protein_id=AAZ99245.1; | - | mitochondrial | No | |
| OSMG00590 | osa | cob;apocytochrome b;protein_id=AAZ99352.1; | - | mitochondrial | No | |
| OTMG00440 | ota | protein_id=CAL36412.2; | cob_1; | + | mitochondrial | No |
| OTMG00640 | ota | protein_id=CAL36424.2; | cob_2; | - | mitochondrial | No |
| PPMG00500 | ppa | cob;cytochrome b;protein_id=BAE93098.1; | transl_table=1; | + | mitochondrial | No |