Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM003658 has 36 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G19510 aly name=scaffold_302129.1;pid=898159;prot=eq;tid=929672 + scaffold_3 No
AL5G00270 aly name=scaffold_500028.1;pid=904324;prot=eq;tid=935837 - scaffold_5 No
AT2G01330 ath nucleotide binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G18060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;nucleotide binding transcript=eq;prot=eq; - 2 No
AT3G18060 ath transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Nitrous oxide reductase, N-terminal (InterPro:IPR011045), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT2G01330.2); Has 46825 Blast hits to 21434 proteins in 724 species: Archae - 58; Bacteria - 7760; Metazoa - 18076; Fungi - 9371; Plants - 5681; Viruses - 0; Other Eukaryotes - 5879 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein transcript=eq;prot=eq; + 3 No
BD2G01827 bdi pid=Bradi2g01827.1;tid=Bradi2g01827.1;GeneName=Bradi2g01827;transcript=eq;prot=eq + Bd2 No
CP00003G04360 cpa name=evm.TU.supercontig_3.436;pid=evm.TU.supercontig_3.436;prot=eq;transcript=eq - supercontig_3 No
CP00211G00020 cpa name=evm.TU.supercontig_211.2;pid=evm.TU.supercontig_211.2;prot=eq;transcript=eq - supercontig_211 No
FV5G16940 fve 66 kDa stress protein (probable) transcript=eq;prot=eq;pid=gene09408 + LG5 No
GM05G34060 gma 05 pid=16260619;transcript=eq;prot=eq;name=Glyma05g34060.1 + Gm05 No
GM08G05640 gma 08 pid=16270096;transcript=eq;prot=eq;name=Glyma08g05640.1 - Gm08 No
GM20G26260 gma 20 pid=16316891;transcript=eq;prot=eq;name=Glyma20g26260.1 - Gm20 No
LJ4G036790 lja prot=eq;transcript=eq;scaffold=CM0042;name=chr4.CM0042.2110.nc - chr4 No
LJ5G029240 lja prot=eq;transcript=eq;scaffold=CM0200;name=chr5.CM0200.1640.nc + chr5 No
MD06G018930 mdo transcript=eq;prot=eq;pid=MDP0000631844;tid=MDP0000631844;contig=MDC015893.105 - 6 No
MD11G019830 mdo transcript=eq;prot=eq;pid=MDP0000823171;tid=MDP0000823171;contig=MDC023232.94 - 11 No
MD14G021730 mdo transcript=eq;prot=eq;pid=MDP0000402014;tid=MDP0000402014;contig=MDC015458.279 - 14 No
ME04251G00190 mes PACid=17970419;RNAname=cassava4.1_003878m;GeneName=cassava4.1_003878m.g;transcript=eq;prot=eq + scaffold04251 No
ME06631G00250 mes PACid=17968086;RNAname=cassava4.1_003872m;GeneName=cassava4.1_003872m.g;transcript=ne;prot=eq - scaffold06631 No
MRCC299_12G00310 mrcc299 name=e_gw2.12.105.1;pid=87049;prot=eq;tid=87049;transcript=eq + Chr_12 No
MT8G106820 mtr 66 kDa stress protein (AHRD V1 ***- P90587); contains Interpro domain(s) IPR019782 WD40 repeat 2 IPR019775 WD40 repeat, conserved site IPR017986 WD40 repeat, region transcript=eq;prot=eq;pid=Medtr8g106820.1; - 8 No
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