Gene family  

Sub-families
ORTHO006684 (24 genes in 24 species)
ORTHO033631 (3 genes in 3 species)
ORTHO040461 (3 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM003654 has 36 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 36 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G04710 aly name=fgenesh2_kg.7__461__AT4G36050.2;pid=491028;prot=eq;tid=491028 + scaffold_7 No
AT4G36050 ath endonuclease/exonuclease/phosphatase family protein; FUNCTIONS IN: zinc ion binding, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 8559 Blast hits to 7505 proteins in 2283 species: Archae - 114; Bacteria - 4844; Metazoa - 586; Fungi - 501; Plants - 129; Viruses - 2; Other Eukaryotes - 2383 (source: NCBI BLink).;endonuclease/exonuclease/phosphatase family protein transcript=eq;prot=eq; - 4 No
BD4G36380 bdi exodeoxyribonuclease activity, producing 5'-phosphomonoesters (Blast2GO) pid=Bradi4g36380.1;tid=Bradi4g36380.1;GeneName=Bradi4g36380;transcript=eq;prot=eq - Bd4 No
CP00006G02500 cpa name=evm.TU.supercontig_6.251;pid=evm.TU.supercontig_6.251;prot=eq;transcript=eq + supercontig_6 No
CR07G07920 cre name=pasa_Sanger_mRNA30736;pid=393584;prot=eq;tid=421242;transcript=eq - chromosome_7 No
CR12G10340 cre name=pasa_Sanger_mRNA9241;pid=424040;prot=eq;tid=399519;transcript=eq - chromosome_12 No
CR12G10620 cre name=pasa_Sanger_mRNA9267;pid=426452;prot=eq;tid=399546;transcript=eq - chromosome_12 No
FV1G13630 fve DNA-(apurinic or apyrimidinic site) lyase 2 (AP endonuclease 2) (probable) transcript=eq;prot=eq;pid=gene14607 - LG1 No
GM02G05430 gma 02 pid=16247071;transcript=eq;prot=eq;name=Glyma02g05430.1 - Gm02 No
GM16G23850 gma 16 pid=16302691;transcript=eq;prot=eq;name=Glyma16g23850.1 - Gm16 No
LJ4G013290 lja prot=eq;transcript=eq;scaffold=CM0119;name=chr4.CM0119.280.nc + chr4 No
ME07520G02610 mes PACid=17979553;RNAname=cassava4.1_022727m;GeneName=cassava4.1_022727m.g;transcript=eq;prot=eq + scaffold07520 No
MRCC299_15G03480 mrcc299 name=fgenesh2_pg.C_Chr_15000235;pid=104463;prot=eq;tid=104463;transcript=eq - Chr_15 No
MRCC299_16G01930 mrcc299 name=EuGene.1600010193;pid=64832;prot=eq;tid=64832;transcript=eq + Chr_16 No
MT8G075810 mtr DNA-(apurinic or apyrimidinic site) lyase 2 (AHRD V1 ***- Q68G58); contains Interpro domain(s) IPR004808 Exodeoxyribonuclease III xth transcript=eq;prot=eq;pid=Medtr8g075810.1; - 8 No
OL04G05050 olu NULL name=eugene.0400010516,pid=31440,prot=eq,tid=31440 - Chr_4 No
OS09G36530 osa endonuclease%2Fexonuclease%2Fphosphatase family protein, putative, expressed transcript=eq;prot=eq; - 9 No
OSINDICA_09G28810 osaindica source=BGI China;type=FgeneSH; transcript=eq;prot=eq;name=OsIFCC029442; - Chr09 No
OT04G05410 ota APEX nuclease (ISS); name=OT04G05410;protein_id=CAL51939.1;prot=eq - chrom04 No
PP00025G01840 ppa NULL name=estExt_fgenesh1_pg.C_250202,pid=160750,prot=eq,tid=160750 - scaffold_25 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier