Gene family  

Sub-families
ORTHO002251 (33 genes in 24 species)
ORTHO076896 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (4 genes)



The gene family HOM003634 has 37 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G08560 aly name=scaffold_600893.1;pid=908836;prot=eq;tid=940349 + scaffold_6 No
AL8G30280 aly name=scaffold_803063.1;pid=919663;prot=eq;tid=951176 + scaffold_8 No
AT5G08565 ath Transcription initiation Spt4-like protein; FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: SPT4 homolog 2 (TAIR:AT5G63670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transcription initiation Spt4-like protein transcript=eq;prot=eq; + 5 No
AT5G63670 ath SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SPT4 homolog 2 transcript=eq;prot=eq; + 5 No
BD1G21400 bdi zinc ion binding (Blast2GO) pid=Bradi1g21400.1;tid=Bradi1g21400.1;GeneName=Bradi1g21400;transcript=eq;prot=eq - Bd1 No
CP02662G00010 cpa name=evm.TU.supercontig_2662.1;pid=evm.TU.supercontig_2662.1;prot=eq;warning=only partially equal protein - supercontig_2662 No
CR02G09250 cre name=fgenesh2_pg.C_scaffold_5000023;pid=166554;prot=eq;tid=166554;transcript=eq + chromosome_2 No
FV0G44470 fve Transcription elongation factor SPT4 homolog 2 (similar to) transcript=eq;prot=eq;pid=gene21700 + scf0513070 No
GM07G40390 gma 07 pid=16269404;transcript=eq;prot=eq;name=Glyma07g40390.1 - Gm07 No
GM17G00250 gma 17 pid=16303901;transcript=eq;prot=eq;name=Glyma17g00250.1 + Gm17 No
LJ0G191710 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_061049;name=LjSGA_061049.1 - LjSGA_061049 No
MD00G230310 mdo transcript=eq;prot=eq;pid=MDP0000125183;tid=MDP0000125183;contig=MDC009987.253 + MDC009987.253 No
MD00G230360 mdo transcript=eq;prot=eq;pid=MDP0000187924;tid=MDP0000187924;contig=MDC009987.257 - MDC009987.257 No
MD00G275650 mdo transcript=eq;prot=eq;pid=MDP0000139608;tid=MDP0000139608;contig=MDC011784.283 + MDC011784.283 No
MD00G438150 mdo transcript=eq;prot=eq;pid=MDP0000907700;tid=MDP0000907700;contig=MDC020065.215 + MDC020065.215 No
MD00G484720 mdo transcript=eq;prot=eq;pid=MDP0000132890;tid=MDP0000132890;contig=MDC022696.164 - MDC022696.164 No
MD09G025800 mdo transcript=eq;prot=eq;pid=MDP0000377605;tid=MDP0000377605;contig=MDC004836.412 - 9 No
MRCC299_02G02520 mrcc299 name=estExt_Genewise2Plus.C_Chr_020843;pid=93520;prot=eq;tid=93520;transcript=eq - Chr_02 No
MT3G092730 mtr Transcription elongation factor SPT4 homolog 2 (AHRD V1 ***- Q94C60); contains Interpro domain(s) IPR009287 Transcription initiation Spt4 transcript=eq;prot=eq;pid=Medtr3g092730.1; + 3 No
MT3G092770 mtr Transcription elongation factor SPT4 homolog 2 (AHRD V1 ***- Q94C60); contains Interpro domain(s) IPR009287 Transcription initiation Spt4 transcript=eq;prot=eq;pid=Medtr3g092770.1; + 3 No
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