Gene family  

Sub-families
ORTHO006979 (23 genes in 18 species)
ORTHO033271 (3 genes in 2 species)
ORTHO055093 (2 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003574 has 37 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G39900 aly name=scaffold_104239.1;pid=891445;prot=eq;tid=922958 - scaffold_1 No
AL8G07630 aly name=fgenesh2_kg.8__523__AT5G42960.1;pid=494707;prot=eq;tid=494707 - scaffold_8 No
AT1G45170 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42960.1); Has 62 Blast hits to 62 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 1 No
AT5G42960 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD1G01047 bdi pid=Bradi1g01047.1;tid=Bradi1g01047.1;GeneName=Bradi1g01047;transcript=eq;prot=eq - Bd1 No
CP00064G00730 cpa name=evm.TU.supercontig_64.73;pid=evm.TU.supercontig_64.73;prot=eq;transcript=eq - supercontig_64 No
CP01379G00050 cpa name=evm.TU.supercontig_1379.5;pid=evm.TU.supercontig_1379.5;prot=eq;transcript=eq + supercontig_1379 No
CP02093G00010 cpa name=evm.TU.supercontig_2093.1;pid=evm.TU.supercontig_2093.1;prot=eq;transcript=eq - supercontig_2093 No
FV2G51140 fve Muscle-related coiled-coil protein (probable) transcript=eq;prot=eq;pid=gene15124 - LG2 No
GM09G18920 gma 09 pid=16275890;transcript=eq;prot=eq;name=Glyma09g18920.1 - Gm09 No
GM14G08240 gma 14 pid=16294808;transcript=eq;prot=eq;name=Glyma14g08240.1 + Gm14 No
GM18G37730 gma 18 pid=16309847;transcript=eq;prot=eq;name=Glyma18g37730.1 - Gm18 No
MD00G003490 mdo transcript=eq;prot=eq;pid=MDP0000134724;tid=MDP0000134724;contig=MDC000142.519 + MDC000142.519 No
MD00G030840 mdo transcript=eq;prot=eq;pid=MDP0000159786;tid=MDP0000159786;contig=MDC001315.775 - MDC001315.775 No
MD00G089230 mdo transcript=eq;prot=eq;pid=MDP0000273960;tid=MDP0000273960;contig=MDC003799.485 - MDC003799.485 No
MD00G399600 mdo transcript=eq;prot=eq;pid=MDP0000206951;tid=MDP0000206951;contig=MDC018184.372 + MDC018184.372 No
MD00G440020 mdo transcript=eq;prot=eq;pid=MDP0000311486;tid=MDP0000311486;contig=MDC020139.149 - MDC020139.149 No
MD08G003050 mdo transcript=eq;prot=eq;pid=MDP0000373126;tid=MDP0000373126;contig=MDC006925.452 - 8 No
MD08G003900 mdo transcript=eq;prot=eq;pid=MDP0000781533;tid=MDP0000781533;contig=MDC010126.48 - 8 No
ME06683G00460 mes PACid=17978992;RNAname=cassava4.1_016079m;GeneName=cassava4.1_016079m.g;transcript=eq;prot=eq - scaffold06683 No
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