Gene family  

Sub-families
ORTHO002703 (31 genes in 23 species)
ORTHO074820 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003542 has 37 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 37 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G13850 aly name=fgenesh2_kg.3__1417__AT3G13330.1;pid=478716;prot=eq;tid=478716 - scaffold_3 No
AT3G13330 ath Encodes a protein that interacts with the 26S proteasome. Mutants are phenotypically indistinguishable from wild type plants under a variety of growth conditions. Protein levels increase upon exposure of seedlings to MG132, a specific, potent, reversible, and cell-permeable proteasome inhibitor.;proteasome activating protein 200 transcript=eq;prot=eq; - 3 No
BD1G42980 bdi pid=Bradi1g42980.1;tid=Bradi1g42980.1;GeneName=Bradi1g42980;transcript=eq;prot=eq - Bd1 No
CP00012G00840 cpa name=evm.TU.supercontig_12.84;pid=evm.TU.supercontig_12.84;prot=eq;transcript=eq + supercontig_12 No
CP00012G00870 cpa name=evm.TU.supercontig_12.87;pid=evm.TU.supercontig_12.87;prot=eq;transcript=eq + supercontig_12 No
CR14G04200 cre name=pasa_Sanger_mRNA12440;pid=395048;prot=eq;tid=402741;transcript=eq + chromosome_14 No
FV3G34810 fve Proteasome activator complex subunit 4 (Protein TEMO) (probable) transcript=eq;prot=eq;pid=gene01456 + LG3 No
GM08G44960 gma 08 pid=16273871;transcript=eq;prot=eq;name=Glyma08g44960.1 - Gm08 No
GM18G07950 gma 18 pid=16308248;transcript=eq;prot=eq;name=Glyma18g07950.1 + Gm18 No
LJ0G082610 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_027424;name=LjSGA_027424.1 - LjSGA_027424 No
LJ0G126000 lja prot=eq;transcript=eq;scaffold=LjSGA_039562;name=LjSGA_039562.1 - LjSGA_039562 No
MD00G014760 mdo transcript=eq;prot=eq;pid=MDP0000411609;tid=MDP0000411609;contig=MDC000625.387 - MDC000625.387 No
MD00G102390 mdo transcript=eq;prot=eq;pid=MDP0000170421;tid=MDP0000170421;contig=MDC004366.66 - MDC004366.66 No
MD00G307460 mdo transcript=eq;prot=eq;pid=MDP0000204412;tid=MDP0000204412;contig=MDC013062.147 - MDC013062.147 No
MD03G002960 mdo transcript=eq;prot=eq;pid=MDP0000300483;tid=MDP0000300483;contig=MDC018101.293 - 3 No
MD11G003460 mdo transcript=eq;prot=eq;pid=MDP0000199958;tid=MDP0000199958;contig=MDC012710.225 - 11 No
ME03736G00020 mes PACid=17991007;RNAname=cassava4.1_021804m;GeneName=cassava4.1_021804m.g;transcript=ne;prot=eq + scaffold03736 No
MRCC299_02G00420 mrcc299 name=fgenesh2_pg.C_Chr_02000569;pid=99193;prot=eq;tid=99193;transcript=eq + Chr_02 No
OL03G03950 olu NULL name=e_gwEuk.3.625.1,pid=34384,prot=eq,tid=34384 + Chr_3 No
OS06G19730 osa HEAT repeat family protein, putative, expressed transcript=eq;prot=eq; + 6 No
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