Gene family  

Sub-families
ORTHO002481 (32 genes in 19 species)
ORTHO044640 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003514 has 38 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G26640 aly name=fgenesh2_kg.4__2100__AT2G40000.1;pid=483040;prot=eq;tid=483040 - scaffold_4 No
AL5G26040 aly name=fgenesh2_kg.5__2018__AT3G55840.1;pid=486026;prot=eq;tid=486026 - scaffold_5 No
AT2G40000 ath ortholog of sugar beet HS1 PRO-1 2 (HSPRO2); CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: Hs1pro-1 protein (TAIR:AT3G55840.1); Has 71 Blast hits to 71 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;ortholog of sugar beet HS1 PRO-1 2 transcript=eq;prot=eq; - 2 No
AT3G55840 ath Hs1pro-1 protein; CONTAINS InterPro DOMAIN/s: Hs1pro-1, C-terminal (InterPro:IPR009743), Hs1pro-1, N-terminal (InterPro:IPR009869); BEST Arabidopsis thaliana protein match is: ortholog of sugar beet HS1 PRO-1 2 (TAIR:AT2G40000.1); Has 60 Blast hits to 60 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Hs1pro-1 protein transcript=eq;prot=eq; - 3 No
BD2G55310 bdi pid=Bradi2g55310.1;tid=Bradi2g55310.1;GeneName=Bradi2g55310;transcript=eq;prot=eq - Bd2 No
CP00019G02030 cpa name=evm.TU.supercontig_19.204;pid=evm.TU.supercontig_19.204;prot=eq;transcript=eq - supercontig_19 No
FV7G29070 fve Actin cytoskeleton-regulatory complex protein pan1 (probable) transcript=eq;prot=eq;pid=gene20931 - LG7 No
GM02G42250 gma 02 pid=16249890;transcript=eq;prot=eq;name=Glyma02g42250.1 - Gm02 No
GM11G35050 gma 11 pid=16285433;transcript=eq;prot=eq;name=Glyma11g35050.1 - Gm11 No
GM14G06640 gma 14 pid=16294599;transcript=eq;prot=eq;name=Glyma14g06640.1 + Gm14 No
GM17G15360 gma 17 pid=16305670;transcript=eq;prot=eq;name=Glyma17g15360.1 + Gm17 No
GM18G03310 gma 18 pid=16307787;transcript=eq;prot=eq;name=Glyma18g03310.1 + Gm18 No
LJ0G431810 lja partial;prot=eq;transcript=eq;scaffold=LjT13K07;name=LjT13K07.110.nd + chr0 No
LJ2G033860 lja prot=eq;transcript=eq;scaffold=LjT46G02;name=chr2.LjT46G02.50.nd + chr2 No
LJ2G034080 lja partial;prot=eq;transcript=eq;scaffold=LjT46G02;name=chr2.LjT46G02.270.nd - chr2 Yes
LJ6G004260 lja partial;prot=eq;transcript=eq;scaffold=LjT30N23;name=chr6.LjT30N23.20.nd - chr6 No
MD00G187470 mdo transcript=eq;prot=eq;pid=MDP0000889787;tid=MDP0000889787;contig=MDC008063.227 + MDC008063.227 No
MD14G016950 mdo transcript=eq;prot=eq;pid=MDP0000293002;tid=MDP0000293002;contig=MDC012914.254 - 14 No
ME08265G03050 mes PACid=17988884;RNAname=cassava4.1_006693m;GeneName=cassava4.1_006693m.g;transcript=eq;prot=eq - scaffold08265 No
ME12439G00060 mes PACid=17991611;RNAname=cassava4.1_006703m;GeneName=cassava4.1_006703m.g;transcript=eq;prot=eq + scaffold12439 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier