Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003489 has 38 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09140 aly name=fgenesh2_kg.3__912__AT3G09030.1;pid=478211;prot=eq;tid=478211 + scaffold_3 No
AL7G36370 aly name=fgenesh2_kg.7__3278__AT5G41330.1;pid=493845;prot=eq;tid=493845 + scaffold_7 No
AT3G09030 ath BTB/POZ domain-containing protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT5G41330.1); Has 1593 Blast hits to 1581 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 1335; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).;BTB/POZ domain-containing protein transcript=eq;prot=eq; + 3 No
AT5G41330 ath BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain-containing protein (TAIR:AT3G09030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;BTB/POZ domain with WD40/YVTN repeat-like protein transcript=eq;prot=eq; - 5 No
BD1G67220 bdi voltage-gated potassium channel activity (Blast2GO) pid=Bradi1g67220.1;tid=Bradi1g67220.1;GeneName=Bradi1g67220;transcript=eq;prot=eq + Bd1 No
BD4G27310 bdi voltage-gated potassium channel activity (Blast2GO) pid=Bradi4g27310.1;tid=Bradi4g27310.1;GeneName=Bradi4g27310;transcript=eq;prot=eq - Bd4 No
CP00106G00310 cpa name=evm.TU.supercontig_106.31;pid=evm.TU.supercontig_106.31;prot=eq;transcript=eq - supercontig_106 No
CP00214G00160 cpa name=evm.TU.supercontig_214.16;pid=evm.TU.supercontig_214.16;prot=eq;transcript=eq + supercontig_214 No
FV5G03120 fve BTB/POZ domain-containing protein KCTD9 (probable) transcript=eq;prot=eq;pid=gene32515 - LG5 No
FV6G10910 fve BTB/POZ domain-containing protein KCTD6 (probable) transcript=eq;prot=eq;pid=gene18827 + LG6 No
GM03G10090 gma 03 pid=16251554;transcript=eq;prot=eq;name=Glyma03g10090.1 - Gm03 No
GM05G37690 gma 05 pid=16261049;transcript=eq;prot=eq;name=Glyma05g37690.1 + Gm05 No
GM08G01900 gma 08 pid=16269628;transcript=eq;prot=eq;name=Glyma08g01900.1 - Gm08 No
GM08G12550 gma 08 pid=16270899;transcript=eq;prot=eq;name=Glyma08g12550.1 + Gm08 No
LJ0G135170 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_042226;name=LjSGA_042226.2 + LjSGA_042226 No
MD00G450940 mdo transcript=eq;prot=eq;pid=MDP0000883315;tid=MDP0000883315;contig=MDC020756.18 - MDC020756.18 No
MD12G017060 mdo transcript=eq;prot=eq;pid=MDP0000381669;tid=MDP0000381669;contig=MDC010597.451 - 12 No
ME03651G00020 mes PACid=17986409;RNAname=cassava4.1_032482m;GeneName=cassava4.1_032482m.g;transcript=eq;prot=eq + scaffold03651 No
ME05280G00390 mes PACid=17970948;RNAname=cassava4.1_006841m;GeneName=cassava4.1_006841m.g;transcript=eq;prot=eq + scaffold05280 No
MT5G093790 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr5g093790.1; + 5 No
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