Gene family  

Sub-families
ORTHO008802 (21 genes in 18 species)
ORTHO051429 (2 genes in 1 species)
ORTHO063105 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003480 has 38 genes in 19 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 38 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G35890 aly name=fgenesh1_pm.C_scaffold_6002590;pid=327370;prot=eq;tid=327370 + scaffold_6 No
AT4G12610 ath RAP74; FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding, transcription activator activity, catalytic activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter, positive regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIF, alpha subunit (InterPro:IPR008851), Transcription Factor IIF, Rap30/Rap74, interaction (InterPro:IPR011039); Has 34394 Blast hits to 22751 proteins in 1168 species: Archae - 120; Bacteria - 4390; Metazoa - 12539; Fungi - 6082; Plants - 2082; Viruses - 445; Other Eukaryotes - 8736 (source: NCBI BLink).;transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors transcript=eq;prot=eq; + 4 No
BD1G67936 bdi pid=Bradi1g67936.1;tid=Bradi1g67936.1;GeneName=Bradi1g67936;transcript=eq;prot=eq + Bd1 No
BD3G22897 bdi pid=Bradi3g22897.1;tid=Bradi3g22897.1;GeneName=Bradi3g22897;transcript=eq;prot=eq - Bd3 No
CP00075G01150 cpa name=evm.TU.supercontig_75.115;pid=evm.TU.supercontig_75.115;prot=eq;transcript=eq + supercontig_75 No
FV0G14000 fve Protein PXR1 (probable) transcript=eq;prot=eq;pid=gene07295 - scf0513160 Yes
FV2G08480 fve Transcription initiation factor IIF subunit alpha (TFIIF-alpha) (similar to) transcript=eq;prot=eq;pid=gene08237 - LG2 No
FV3G02120 fve Transcription initiation factor IIF subunit alpha (TFIIF-alpha) (similar to) transcript=eq;prot=eq;pid=gene19759 - LG3 No
FV3G06120 fve Transcription initiation factor IIF subunit alpha (TFIIF-alpha) (probable) transcript=eq;prot=eq;pid=gene30420 + LG3 No
FV6G01520 fve Protein kinase C-like (probable) transcript=eq;prot=eq;pid=gene31436 - LG6 Yes
GM09G01260 gma 09 pid=16274389;transcript=eq;prot=eq;name=Glyma09g01260.1 - Gm09 No
GM15G12090 gma 15 pid=16298499;transcript=eq;prot=eq;name=Glyma15g12090.1 - Gm15 No
LJ0G412840 lja partial;prot=eq;transcript=eq;scaffold=LjB03P03;name=LjB03P03.120.nd - chr0 No
LJ0G412850 lja partial;prot=eq;transcript=eq;scaffold=LjB03P03;name=LjB03P03.130.nd - chr0 No
LJ4G000940 lja prot=eq;transcript=eq;scaffold=CM0288;name=chr4.CM0288.720.nc + chr4 No
MD05G000690 mdo transcript=eq;prot=eq;pid=MDP0000294796;tid=MDP0000294796;contig=MDC011793.214 + 5 No
MD10G027250 mdo transcript=eq;prot=eq;pid=MDP0000192249;tid=MDP0000192249;contig=MDC010473.396 - 10 No
ME07432G00020 mes PACid=17985592;RNAname=cassava4.1_005364m;GeneName=cassava4.1_005364m.g;transcript=ne;prot=eq + scaffold07432 No
MT2G025590 mtr Transcription initiation factor IIF subunit alpha (AHRD V1 ***- Q9SU25); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit transcript=eq;prot=eq;pid=Medtr2g025590.1; - 2 No
MT2G025620 mtr Transcription initiation factor IIF subunit alpha (AHRD V1 *-*- Q9SU25); contains Interpro domain(s) IPR008851 Transcription initiation factor IIF, alpha subunit transcript=eq;prot=eq;pid=Medtr2g025620.1; - 2 No
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