Gene family  

Sub-families
ORTHO002438 (32 genes in 25 species)
ORTHO021958 (5 genes in 5 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM003406 has 39 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G11000 aly name=fgenesh2_kg.3__1099__AT3G10640.1;pid=478398;prot=eq;tid=478398 - scaffold_3 No
AL6G04240 aly name=fgenesh1_pm.C_scaffold_6000341;pid=325121;prot=eq;tid=325121 - scaffold_6 No
AT3G10640 ath VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 1147 Blast hits to 1145 proteins in 230 species: Archae - 3; Bacteria - 8; Metazoa - 447; Fungi - 307; Plants - 230; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).;SNF7 family protein transcript=eq;prot=eq; - 3 No
AT5G04850 ath VPS60.2; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G10640.1).;SNF7 family protein transcript=eq;prot=eq; - 5 No
BD2G03580 bdi pid=Bradi2g03580.1;tid=Bradi2g03580.1;GeneName=Bradi2g03580;transcript=eq;prot=eq + Bd2 No
BD2G39980 bdi phosphatidylinositol-4,5-bisphosphate binding (Blast2GO) pid=Bradi2g39980.1;tid=Bradi2g39980.1;GeneName=Bradi2g39980;transcript=eq;prot=eq - Bd2 No
CP00694G00020 cpa name=evm.TU.supercontig_694.2;pid=evm.TU.supercontig_694.2;prot=eq;transcript=eq - supercontig_694 No
CR13G03430 cre name=Chlre2_kg.scaffold_2000295;pid=143567;prot=eq;tid=143567;transcript=eq + chromosome_13 No
FV7G15410 fve Charged multivesicular body protein 5 (probable) transcript=eq;prot=eq;pid=gene23680 - LG7 No
GM10G33960 gma 10 pid=16280866;transcript=eq;prot=eq;name=Glyma10g33960.1 - Gm10 No
GM20G33630 gma 20 pid=16317745;transcript=eq;prot=eq;name=Glyma20g33630.1 + Gm20 No
LJ5G021970 lja prot=eq;transcript=eq;scaffold=CM0909;name=chr5.CM0909.580.nc - chr5 No
MD00G368890 mdo transcript=eq;prot=eq;pid=MDP0000214971;tid=MDP0000214971;contig=MDC016679.49 - MDC016679.49 No
MD08G020450 mdo transcript=eq;prot=eq;pid=MDP0000232670;tid=MDP0000232670;contig=MDC022778.432 - 8 No
ME12865G00210 mes PACid=17976154;RNAname=cassava4.1_015129m;GeneName=cassava4.1_015129m.g;transcript=eq;prot=eq - scaffold12865 No
MRCC299_04G06550 mrcc299 name=AZW_est_cluster_kg.Chr_04__132__3200226:1;pid=112661;prot=eq;tid=112661;transcript=eq - Chr_04 No
MT0G20140 mtr Charged multivesicular body protein 5 (AHRD V1 ***- Q54JK4); contains Interpro domain(s) IPR005024 Snf7 transcript=eq;prot=eq;pid=AC233556_7.1; + AC233556.3 No
MT1G090490 mtr Charged multivesicular body protein 5 (AHRD V1 ***- Q54JK4); contains Interpro domain(s) IPR005024 Snf7 transcript=eq;prot=eq;pid=Medtr1g090490.1; - 1 No
OL04G02490 olu NULL name=ost_04_012_064,pid=87009,prot=eq,tid=87009 + Chr_4 No
OS01G01350 osa SNF7 domain containing protein, putative, expressed transcript=eq;prot=eq; - 1 No
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