Gene family  

Sub-families
ORTHO005187 (26 genes in 22 species)
ORTHO044742 (2 genes in 2 species)
ORTHO044743 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003390 has 39 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G30740 aly name=fgenesh1_pg.C_scaffold_5002468;pid=349076;prot=eq;tid=349076 - scaffold_5 No
AL5G31070 aly name=scaffold_503268.1;pid=907564;prot=eq;tid=939077 + scaffold_5 No
AL5G31100 aly name=fgenesh1_pm.C_scaffold_5002040;pid=324496;prot=eq;tid=324496 + scaffold_5 No
AL5G31110 aly name=fgenesh2_kg.5__2510__AT3G60450.1;pid=486518;prot=eq;tid=486518 + scaffold_5 No
AT3G60420 ath Phosphoglycerate mutase family protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; + 3 No
AT3G60440 ath Phosphoglycerate mutase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60450.1); Has 266 Blast hits to 262 proteins in 108 species: Archae - 0; Bacteria - 57; Metazoa - 8; Fungi - 71; Plants - 68; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; + 3 No
AT3G60450 ath Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), PRIB5 (InterPro:IPR012398); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT3G60440.1); Has 301 Blast hits to 297 proteins in 123 species: Archae - 0; Bacteria - 109; Metazoa - 16; Fungi - 49; Plants - 68; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; + 3 No
BD1G78410 bdi pid=Bradi1g78410.1;tid=Bradi1g78410.1;GeneName=Bradi1g78410;transcript=eq;prot=eq - Bd1 No
CP00101G00340 cpa name=evm.TU.supercontig_101.34;pid=evm.TU.supercontig_101.34;prot=eq;transcript=eq - supercontig_101 No
CR03G03750 cre name=pasa_Sanger_mRNA21982;pid=417716;prot=eq;tid=412394;transcript=eq + chromosome_3 No
CR03G10640 cre name=estExt_fgenesh1_pg.C_chromosome_30715;pid=343682;prot=eq;tid=343689;transcript=eq - chromosome_3 No
CR10G04870 cre name=pm.chromosome_10_#_274;pid=338595;prot=eq;tid=338602;transcript=eq + chromosome_10 No
FV7G13690 fve Protein UBASH3A homolog (probable) transcript=eq;prot=eq;pid=gene04801 - LG7 No
GM00G00060 gma 23 pid=16242661;transcript=eq;prot=eq;name=Glyma0023s00610.1 + scaffold_23 No
GM03G26840 gma 03 pid=16252439;transcript=eq;prot=eq;name=Glyma03g26840.1 - Gm03 No
GM07G14490 gma 07 pid=16267271;transcript=eq;prot=eq;name=Glyma07g14490.1 - Gm07 No
GM08G44670 gma 08 pid=16273841;transcript=eq;prot=eq;name=Glyma08g44670.1 - Gm08 No
LJ0G278490 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_094477;name=LjSGA_094477.1 - LjSGA_094477 No
LJ0G383110 lja prot=eq;transcript=eq;scaffold=LjSGA_139414;name=LjSGA_139414.1 - LjSGA_139414 No
LJ0G432180 lja prot=eq;transcript=eq;scaffold=LjT36B17;name=LjT36B17.130.nd - chr0 No
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