Gene family  

Sub-families
ORTHO002198 (33 genes in 25 species)
ORTHO035216 (3 genes in 3 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003376 has 39 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G14940 aly name=fgenesh2_kg.4__1003__AT2G30320.1;pid=481943;prot=eq;tid=481943 - scaffold_4 No
AT2G30320 ath Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2235 Blast hits to 2027 proteins in 681 species: Archae - 89; Bacteria - 873; Metazoa - 390; Fungi - 255; Plants - 163; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink).;Pseudouridine synthase family protein transcript=eq;prot=eq; - 2 No
BD1G63050 bdi pid=Bradi1g63050.1;tid=Bradi1g63050.1;GeneName=Bradi1g63050;transcript=eq;prot=eq - Bd1 No
CP29031G00030 cpa name=evm.TU.contig_29031.3;pid=evm.TU.contig_29031.3;prot=eq;transcript=eq - contig_29031 No
CR03G01150 cre name=fgenesh2_pg.C_scaffold_34000159;pid=175853;prot=eq;tid=175853;transcript=eq - chromosome_3 No
CR16G09290 cre name=SKA_Chlre2_kg.scaffold_46000025;pid=205583;prot=eq;tid=205588;transcript=eq - chromosome_16 No
FV3G31800 fve Putative tRNA pseudouridine synthase transcript=eq;prot=eq;pid=gene28151 + LG3 No
GM00G00775 gma 448 pid=16254300;transcript=eq;prot=eq;name=Glyma0448s00210.1 - scaffold_448 No
GM02G39970 gma 02 pid=16249629;transcript=eq;prot=eq;name=Glyma02g39970.1 - Gm02 No
GM02G39980 gma 02 pid=16249630;transcript=eq;prot=eq;name=Glyma02g39980.1 - Gm02 No
LJ0G080370 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_026806;name=LjSGA_026806.1 + LjSGA_026806 No
LJ0G279120 lja prot=eq;transcript=eq;scaffold=LjSGA_094733;name=LjSGA_094733.2 + LjSGA_094733 No
LJ2G031130 lja partial;prot=eq;transcript=eq;scaffold=CM0058;name=chr2.CM0058.280.nd - chr2 No
MD00G168000 mdo transcript=eq;prot=eq;pid=MDP0000180017;tid=MDP0000180017;contig=MDC007194.188 + MDC007194.188 No
MD11G004770 mdo transcript=eq;prot=eq;pid=MDP0000136685;tid=MDP0000136685;contig=MDC007194.264 - 11 No
ME11616G00010 mes PACid=17977318;RNAname=cassava4.1_030593m;GeneName=cassava4.1_030593m.g;transcript=eq;prot=eq + scaffold11616 No
ME11616G00020 mes PACid=17977317;RNAname=cassava4.1_025076m;GeneName=cassava4.1_025076m.g;transcript=eq;prot=eq + scaffold11616 No
ME11616G00030 mes PACid=17977316;RNAname=cassava4.1_018796m;GeneName=cassava4.1_018796m.g;transcript=eq;prot=eq + scaffold11616 No
MRCC299_15G00510 mrcc299 name=fgenesh2_pg.C_Chr_15000031;pid=104259;prot=eq;tid=104259;transcript=eq + Chr_15 No
MT5G074620 mtr Pseudouridylate synthase (Fragment) (AHRD V1 **** D1H3V0_VITVI); contains Interpro domain(s) IPR001406 Pseudouridine synthase I, TruA transcript=eq;prot=eq;pid=Medtr5g074620.1; - 5 No
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