Gene family  

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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM003375 has 39 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G09770 aly name=scaffold_301089.1;pid=897119;prot=eq;tid=928632 + scaffold_3 No
AL3G09790 aly name=scaffold_301091.1;pid=897121;prot=eq;tid=928634 + scaffold_3 No
AL7G17650 aly name=fgenesh2_kg.7__1829__AT4G24490.2;pid=492396;prot=eq;tid=492396 + scaffold_7 No
AL7G35800 aly name=fgenesh2_kg.7__3235__AT5G41820.1;pid=493802;prot=eq;tid=493802 - scaffold_7 No
AT4G24490 ath RAB geranylgeranyl transferase alpha subunit 1 (RGTA1); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink).;RAB geranylgeranyl transferase alpha subunit 1 transcript=eq;prot=eq; - 4 No
AT5G41820 ath RAB geranylgeranyl transferase alpha subunit 2 (RGTA2); FUNCTIONS IN: protein prenyltransferase activity; INVOLVED IN: protein amino acid prenylation; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611), Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;RAB geranylgeranyl transferase alpha subunit 2 transcript=eq;prot=eq; + 5 No
BD1G32580 bdi CAAX-protein geranylgeranyltransferase activity (Blast2GO) pid=Bradi1g32580.1;tid=Bradi1g32580.1;GeneName=Bradi1g32580;transcript=eq;prot=eq - Bd1 No
CP34457G00010 cpa name=evm.TU.contig_34457.1;pid=evm.TU.contig_34457.1;prot=eq;transcript=eq - contig_34457 No
CP39765G00010 cpa name=evm.TU.contig_39765.1;pid=evm.TU.contig_39765.1;prot=eq;transcript=eq + contig_39765 No
CR07G05690 cre name=Chlre2_kg.scaffold_16000010;pid=145919;prot=eq;tid=145919;transcript=eq + chromosome_7 No
FV5G21410 fve Leucine-rich repeat and IQ domain-containing protein 1 (probable) transcript=eq;prot=eq;pid=gene12147 - LG5 No
FV5G21420 fve Geranylgeranyl transferase type-2 subunit alpha (Rab GG transferase alpha) (probable) transcript=eq;prot=eq;pid=gene12148 - LG5 No
GM02G13650 gma 02 pid=16247983;transcript=eq;prot=eq;name=Glyma02g13650.1 + Gm02 No
GM04G10240 gma 04 pid=16255514;transcript=eq;prot=eq;name=Glyma04g10240.1 + Gm04 No
GM06G10210 gma 06 pid=16262405;transcript=eq;prot=eq;name=Glyma06g10210.1 + Gm06 No
LJ0G086880 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_028556;name=LjSGA_028556.1 + LjSGA_028556 No
LJ0G119450 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_037624;name=LjSGA_037624.1.1 - LjSGA_037624 No
LJ0G148890 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_046723;name=LjSGA_046723.1 - LjSGA_046723 No
MD08G018910 mdo transcript=eq;prot=eq;pid=MDP0000188598;tid=MDP0000188598;contig=MDC011497.306 + 8 No
MD15G030570 mdo transcript=eq;prot=eq;pid=MDP0000304933;tid=MDP0000304933;contig=MDC018890.132 + 15 No
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