Gene family  

Sub-families
ORTHO009633 (20 genes in 17 species)
ORTHO014660 (11 genes in 9 species)
ORTHO023067 (5 genes in 5 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003350 has 39 genes in 17 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G05760 aly name=Al_scaffold_0005_546;pid=865067;prot=eq;tid=896580 + scaffold_5 No
AL6G12850 aly name=fgenesh2_kg.6__1264__AT5G13140.1;pid=488130;prot=eq;tid=488130 - scaffold_6 No
AL7G36660 aly name=fgenesh1_pg.C_scaffold_7003044;pid=355871;prot=eq;tid=355871 + scaffold_7 No
AT3G26960 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G41050.1); Has 95 Blast hits to 95 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; - 3 No
AT5G13140 ath Pollen Ole e 1 allergen and extensin family protein; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; - 5 No
AT5G41050 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT3G26960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; - 5 No
BD4G07580 bdi pid=Bradi4g07580.1;tid=Bradi4g07580.1;GeneName=Bradi4g07580;transcript=eq;prot=eq + Bd4 No
BD4G34770 bdi pid=Bradi4g34770.1;tid=Bradi4g34770.1;GeneName=Bradi4g34770;transcript=eq;prot=eq - Bd4 No
CP00019G01660 cpa name=evm.TU.supercontig_19.167;pid=evm.TU.supercontig_19.167;prot=eq;transcript=eq + supercontig_19 No
CP00070G01190 cpa name=evm.TU.supercontig_70.119;pid=evm.TU.supercontig_70.119;prot=eq;transcript=eq + supercontig_70 No
FV6G51420 fve Major pollen allergen (probable) transcript=eq;prot=eq;pid=gene01357 + LG6 No
GM08G47590 gma 08 pid=16274175;transcript=eq;prot=eq;name=Glyma08g47590.1 - Gm08 No
GM16G05760 gma 16 pid=16301613;transcript=eq;prot=eq;name=Glyma16g05760.1 + Gm16 No
GM18G53890 gma 18 pid=16311378;transcript=eq;prot=eq;name=Glyma18g53890.1 + Gm18 No
GM19G26710 gma 19 pid=16312902;transcript=eq;prot=eq;name=Glyma19g26710.1 - Gm19 No
MD13G009580 mdo transcript=eq;prot=eq;pid=MDP0000285868;tid=MDP0000285868;contig=MDC010580.222 - 13 No
MD17G000480 mdo transcript=eq;prot=eq;pid=MDP0000656794;tid=MDP0000656794;contig=MDC002619.349 - 17 No
ME03040G00040 mes PACid=17980551;RNAname=cassava4.1_017861m;GeneName=cassava4.1_017861m.g;transcript=eq;prot=eq - scaffold03040 No
ME03219G00320 mes PACid=17977854;RNAname=cassava4.1_018325m;GeneName=cassava4.1_018325m.g;transcript=eq;prot=eq + scaffold03219 No
ME06711G00490 mes PACid=17961552;RNAname=cassava4.1_011637m;GeneName=cassava4.1_011637m.g;transcript=ne;prot=eq + scaffold06711 No
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