Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM003346 has 39 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G27620 aly name=scaffold_402867.1;pid=903366;prot=eq;tid=934879 - scaffold_4 No
AT2G40730 ath Protein kinase family protein with ARM repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-like helical (InterPro:IPR011989), Serine/threonine-protein kinase domain (InterPro:IPR002290), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G71410.1); Has 4566 Blast hits to 2083 proteins in 348 species: Archae - 0; Bacteria - 278; Metazoa - 876; Fungi - 585; Plants - 192; Viruses - 19; Other Eukaryotes - 2616 (source: NCBI BLink).;Protein kinase family protein with ARM repeat domain transcript=eq;prot=eq; - 2 No
BD1G00390 bdi protein kinase activity (Blast2GO) pid=Bradi1g00390.1;tid=Bradi1g00390.1;GeneName=Bradi1g00390;transcript=eq;prot=eq + Bd1 No
BD2G53460 bdi protein kinase family protein, putative, expressed, subfamily Other pid=Bradi2g53460.1;tid=Bradi2g53460.1;GeneName=Bradi2g53460;transcript=eq;prot=eq - Bd2 No
CP00019G00490 cpa name=evm.TU.supercontig_19.49;pid=evm.TU.supercontig_19.49;prot=eq;transcript=eq + supercontig_19 No
CP00019G00500 cpa name=evm.TU.supercontig_19.50;pid=evm.TU.supercontig_19.50;prot=eq;transcript=eq + supercontig_19 No
CR13G02890 cre name=Chlre2_kg.scaffold_2000244;pid=143516;prot=eq;tid=143516;transcript=eq - chromosome_13 No
FV4G23180 fve Probable inactive serine/threonine-protein kinase scy1 transcript=eq;prot=eq;pid=gene00785 + LG4 No
GM09G38740 gma 09 pid=16277673;transcript=eq;prot=eq;name=Glyma09g38740.1 + Gm09 No
GM18G47590 gma 18 pid=16310746;transcript=eq;prot=eq;name=Glyma18g47590.1 - Gm18 No
GM20G36180 gma 20 pid=16318038;transcript=eq;prot=eq;name=Glyma20g36180.1 + Gm20 No
LJ0G092690 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_030164;name=LjSGA_030164.1.1 - LjSGA_030164 No
MD00G189430 mdo transcript=eq;prot=eq;pid=MDP0000320064;tid=MDP0000320064;contig=MDC008131.113 + MDC008131.113 No
MD16G007990 mdo transcript=eq;prot=eq;pid=MDP0000302888;tid=MDP0000302888;contig=MDC018131.78 + 16 No
ME03454G00210 mes PACid=17981759;RNAname=cassava4.1_001931m;GeneName=cassava4.1_001931m.g;transcript=eq;prot=eq + scaffold03454 No
ME10729G00130 mes PACid=17976696;RNAname=cassava4.1_013088m;GeneName=cassava4.1_013088m.g;transcript=ne;prot=eq + scaffold10729 No
MRCC299_16G01390 mrcc299 name=e_gw2.16.12.1;pid=89032;prot=eq;tid=89032;transcript=eq - Chr_16 No
MT0G37510 mtr N-terminal kinase-like protein (AHRD V1 ***- Q9EQC5); contains Interpro domain(s) IPR000719 Protein kinase, core transcript=eq;prot=eq;pid=AC235754_17.1; + AC235754.6 No
MT0G37580 mtr N-terminal kinase-like protein (AHRD V1 *-*- D0NJ18_PHYIN); contains Interpro domain(s) IPR011989 Armadillo-like helical transcript=eq;pid=AC235754_24.1; - AC235754.6 No
MT4G119360 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr4g119360.1; - 4 Yes
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