Gene family  

Sub-families
ORTHO007611 (22 genes in 19 species)
ORTHO034769 (3 genes in 3 species)
ORTHO045486 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003339 has 39 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G00230 aly name=Al_scaffold_0001_21;pid=878254;prot=eq;tid=909767 - scaffold_1 No
AL1G00580 aly name=fgenesh2_kg.1__58__AT1G01710.1;pid=470104;prot=eq;tid=470104 - scaffold_1 No
AL6G41120 aly name=Al_scaffold_0006_3968;pid=864459;prot=eq;tid=895972 - scaffold_6 No
AT1G01710 ath Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink).;Acyl-CoA thioesterase family protein transcript=eq;prot=eq; + 1 No
AT4G00520 ath Acyl-CoA thioesterase family protein; FUNCTIONS IN: acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT1G01710.1); Has 3429 Blast hits to 3402 proteins in 976 species: Archae - 0; Bacteria - 1910; Metazoa - 393; Fungi - 300; Plants - 65; Viruses - 0; Other Eukaryotes - 761 (source: NCBI BLink).;Acyl-CoA thioesterase family protein transcript=eq;prot=eq; + 4 No
BD5G18080 bdi cGMP-dependent protein kinase activity (Blast2GO) pid=Bradi5g18080.1;tid=Bradi5g18080.1;GeneName=Bradi5g18080;transcript=eq;prot=eq + Bd5 No
CP00018G02440 cpa name=evm.TU.supercontig_18.244;pid=evm.TU.supercontig_18.244;prot=eq;transcript=eq - supercontig_18 No
FV7G08170 fve cGMP-dependent protein kinase 1, beta isozyme (cGK 1 beta) (probable) transcript=eq;prot=eq;pid=gene19326 + LG7 No
FV7G08180 fve F-box/kelch-repeat protein SKIP4 (similar to) transcript=eq;prot=eq;pid=gene19327 + LG7 No
GM03G01210 gma 03 pid=16250747;transcript=eq;prot=eq;name=Glyma03g01210.1 + Gm03 No
GM07G07770 gma 07 pid=16266568;transcript=eq;prot=eq;name=Glyma07g07770.1 + Gm07 No
GM08G26710 gma 08 pid=16272561;transcript=eq;prot=eq;name=Glyma08g26710.1 + Gm08 No
GM09G39610 gma 09 pid=16277770;transcript=eq;prot=eq;name=Glyma09g39610.1 + Gm09 No
GM18G46610 gma 18 pid=16310646;transcript=eq;prot=eq;name=Glyma18g46610.1 - Gm18 No
GM18G46620 gma 18 pid=16310647;transcript=eq;prot=eq;name=Glyma18g46620.1 - Gm18 No
MD00G048980 mdo transcript=eq;prot=eq;pid=MDP0000145834;tid=MDP0000145834;contig=MDC002046.322 - MDC002046.322 No
MD00G125200 mdo transcript=eq;prot=eq;pid=MDP0000276233;tid=MDP0000276233;contig=MDC005316.201 - MDC005316.201 No
MD00G405030 mdo transcript=eq;prot=eq;pid=MDP0000244124;tid=MDP0000244124;contig=MDC018407.187 - MDC018407.187 No
MD00G405060 mdo transcript=eq;prot=eq;pid=MDP0000244125;tid=MDP0000244125;contig=MDC018407.210 + MDC018407.210 No
MD00G407920 mdo transcript=eq;prot=eq;pid=MDP0000152651;tid=MDP0000152651;contig=MDC018565.106 + MDC018565.106 No
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