Gene family  

Sub-families
ORTHO004227 (27 genes in 25 species)
ORTHO071153 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003336 has 39 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G13400 aly name=scaffold_101422.1;pid=888628;prot=eq;tid=920141 + scaffold_1 No
AL1G13780 aly name=fgenesh2_kg.1__1423__AT1G13160.1;pid=471469;prot=eq;tid=471469 + scaffold_1 No
AL7G10060 aly name=fgenesh1_pm.C_scaffold_7000798;pid=328571;prot=eq;tid=328571 + scaffold_7 No
AT1G13160 ath ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink).;ARM repeat superfamily protein transcript=eq;prot=eq; + 1 No
AT4G31520 ath SDA1 family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G13160.1); Has 8756 Blast hits to 5682 proteins in 453 species: Archae - 14; Bacteria - 613; Metazoa - 3270; Fungi - 1126; Plants - 516; Viruses - 196; Other Eukaryotes - 3021 (source: NCBI BLink).;SDA1 family protein transcript=eq;prot=eq; - 4 No
BD5G22790 bdi pid=Bradi5g22790.1;tid=Bradi5g22790.1;GeneName=Bradi5g22790;transcript=eq;prot=eq + Bd5 No
CP00033G00730 cpa name=evm.TU.supercontig_33.73;pid=evm.TU.supercontig_33.73;prot=eq;transcript=eq + supercontig_33 No
CR06G05910 cre name=estExt_fgenesh1_pg.C_chromosome_60393;pid=344272;prot=eq;tid=344279;transcript=eq - chromosome_6 No
FV0G11210 fve Protein SDA1 homolog (probable) transcript=eq;prot=eq;pid=gene06963 + scf0513160 No
GM11G37660 gma 11 pid=16285730;transcript=eq;prot=eq;name=Glyma11g37660.1 - Gm11 No
LJ2G000450 lja partial;prot=eq;transcript=eq;scaffold=LjT44B19;name=chr2.LjT44B19.130.nd + chr2 No
LJ2G028130 lja prot=eq;transcript=eq;scaffold=CM0060;name=chr2.CM0060.90.nc - chr2 No
LJ2G028280 lja partial;prot=eq;transcript=eq;scaffold=CM0060;name=chr2.CM0060.240.nd + chr2 No
MD00G067110 mdo transcript=eq;prot=eq;pid=MDP0000120573;tid=MDP0000120573;contig=MDC002818.341 + MDC002818.341 No
MD16G006310 mdo transcript=eq;prot=eq;pid=MDP0000946443;tid=MDP0000946443;contig=MDC001269.479 + 16 No
ME04175G00530 mes PACid=17963313;RNAname=cassava4.1_001844m;GeneName=cassava4.1_001844m.g;transcript=ne;prot=eq + scaffold04175 No
MRCC299_05G06110 mrcc299 name=e_gw2.05.65.1;pid=82167;prot=eq;tid=82167;transcript=eq + Chr_05 No
MT3G086350 mtr Protein SDA1 homolog (AHRD V1 ***- Q6NV26); contains Interpro domain(s) IPR007949 SDA1 transcript=eq;prot=eq;pid=Medtr3g086350.1; - 3 No
MT4G005970 mtr Protein SDA1 homolog (AHRD V1 ***- A5D7C2); contains Interpro domain(s) IPR012977 Region of unknown function, nucleolar NUC130/133, N-terminal transcript=eq;prot=eq;pid=Medtr4g005970.1; + 4 No
MT4G006000 mtr Protein SDA1 homolog (AHRD V1 ***- Q9NVU7); contains Interpro domain(s) IPR007949 SDA1 transcript=eq;prot=eq;pid=Medtr4g006000.1; - 4 No
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