Gene family  

Sub-families
ORTHO009647 (20 genes in 19 species)
ORTHO011419 (17 genes in 17 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM003322 has 39 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G30420 aly name=fgenesh2_kg.5__2441__AT3G59840.1;pid=486449;prot=eq;tid=486449 - scaffold_5 No
AL8G01600 aly name=fgenesh2_kg.8__138__AT5G46560.1;pid=494322;prot=eq;tid=494322 - scaffold_8 No
AT3G59840 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 72 Blast hits to 72 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT5G46560 ath CONTAINS InterPro DOMAIN/s: Inner nuclear membrane protein MAN1 (InterPro:IPR018996); Has 58 Blast hits to 58 proteins in 29 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 15; Plants - 20; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
BD1G78690 bdi pid=Bradi1g78690.1;tid=Bradi1g78690.1;GeneName=Bradi1g78690;transcript=eq;prot=eq + Bd1 No
BD2G20780 bdi pid=Bradi2g20780.1;tid=Bradi2g20780.1;GeneName=Bradi2g20780;transcript=eq;prot=eq + Bd2 No
CP00006G03970 cpa name=evm.TU.supercontig_6.398;pid=evm.TU.supercontig_6.398;prot=eq;transcript=eq + supercontig_6 No
CP00006G04000 cpa name=evm.TU.supercontig_6.401;pid=evm.TU.supercontig_6.401;prot=eq;transcript=eq + supercontig_6 No
FV5G30650 fve Inner nuclear membrane protein HEH2 (probable) transcript=eq;prot=eq;pid=gene10518 - LG5 No
GM01G35050 gma 01 pid=16245204;transcript=eq;prot=eq;name=Glyma01g35050.1 - Gm01 No
GM01G40910 gma 01 pid=16245877;transcript=eq;prot=eq;name=Glyma01g40910.1 - Gm01 No
GM01G40940 gma 01 pid=16245880;transcript=eq;prot=eq;name=Glyma01g40940.1 - Gm01 No
GM11G04430 gma 11 pid=16282661;transcript=eq;prot=eq;name=Glyma11g04430.1 + Gm11 No
LJ2G026480 lja prot=eq;transcript=eq;scaffold=CM0021;name=chr2.CM0021.810.nc - chr2 No
LJ2G026590 lja partial;prot=eq;transcript=eq;scaffold=CM0021;name=chr2.CM0021.920.nd - chr2 No
MD00G105790 mdo transcript=eq;prot=eq;pid=MDP0000276427;tid=MDP0000276427;contig=MDC004525.264 - MDC004525.264 No
MD00G153040 mdo transcript=eq;prot=eq;pid=MDP0000183494;tid=MDP0000183494;contig=MDC006595.275 + MDC006595.275 No
MD00G260080 mdo transcript=eq;prot=eq;pid=MDP0000185212;tid=MDP0000185212;contig=MDC011150.192 - MDC011150.192 No
ME04495G00160 mes PACid=17970690;RNAname=cassava4.1_010601m;GeneName=cassava4.1_010601m.g;transcript=eq;prot=eq - scaffold04495 No
ME07069G00230 mes PACid=17967994;RNAname=cassava4.1_025875m;GeneName=cassava4.1_025875m.g;transcript=eq;prot=eq + scaffold07069 No
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