Gene family  

Sub-families
ORTHO004071 (28 genes in 19 species)
ORTHO034960 (3 genes in 2 species)
ORTHO037434 (3 genes in 3 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (8 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003316 has 39 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 39 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G16240 aly name=Al_scaffold_0007_1553;pid=858054;prot=eq;tid=889567 - scaffold_7 No
AL7G16250 aly name=fgenesh1_pm.C_scaffold_7001315;pid=329088;prot=eq;tid=329088 - scaffold_7 No
AT4G25850 ath OSBP(oxysterol binding protein)-related protein 4B (ORP4B); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4A (TAIR:AT4G25860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 4B transcript=eq;prot=eq; + 4 No
AT4G25860 ath OSBP(oxysterol binding protein)-related protein 4A (ORP4A); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.1); Has 2166 Blast hits to 2165 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1078; Fungi - 636; Plants - 233; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 4A transcript=eq;prot=eq; + 4 No
AT5G57240 ath OSBP(oxysterol binding protein)-related protein 4C (ORP4C); FUNCTIONS IN: oxysterol binding; INVOLVED IN: steroid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oxysterol-binding protein, conserved site (InterPro:IPR018494), Oxysterol-binding protein (InterPro:IPR000648); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.1); Has 2168 Blast hits to 2165 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 1089; Fungi - 634; Plants - 225; Viruses - 0; Other Eukaryotes - 220 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 4C transcript=eq;prot=eq; + 5 No
BD3G40600 bdi pid=Bradi3g40600.1;tid=Bradi3g40600.1;GeneName=Bradi3g40600;transcript=eq;prot=eq - Bd3 No
CP00095G00210 cpa name=evm.TU.supercontig_95.21;pid=evm.TU.supercontig_95.21;prot=eq;transcript=eq + supercontig_95 No
FV4G04470 fve Oxysterol-binding protein-related protein 5 (OSBP-related protein 5) (probable) transcript=eq;prot=eq;pid=gene17236 - LG4 No
GM09G06620 gma 09 pid=16274999;transcript=eq;prot=eq;name=Glyma09g06620.1 - Gm09 No
GM09G06630 gma 09 pid=16275000;transcript=eq;prot=eq;name=Glyma09g06630.1 - Gm09 No
GM13G00590 gma 13 pid=16289230;transcript=eq;prot=eq;name=Glyma13g00590.1 + Gm13 No
GM15G17800 gma 15 pid=16299139;transcript=eq;prot=eq;name=Glyma15g17800.1 - Gm15 No
GM15G17810 gma 15 pid=16299140;transcript=eq;prot=eq;name=Glyma15g17810.1 - Gm15 No
GM17G06750 gma 17 pid=16304662;transcript=eq;prot=eq;name=Glyma17g06750.1 + Gm17 No
GM17G06760 gma 17 pid=16304663;transcript=eq;prot=eq;name=Glyma17g06760.1 + Gm17 No
GM17G06770 gma 17 pid=16304664;transcript=eq;prot=eq;name=Glyma17g06770.1 + Gm17 No
MD00G168850 mdo transcript=eq;prot=eq;pid=MDP0000845576;tid=MDP0000845576;contig=MDC007235.578 - MDC007235.578 No
MD00G309890 mdo transcript=eq;prot=eq;pid=MDP0000127563;tid=MDP0000127563;contig=MDC013163.208 - MDC013163.208 No
ME11232G00100 mes PACid=17992091;RNAname=cassava4.1_010232m;GeneName=cassava4.1_010232m.g;transcript=eq;prot=eq + scaffold11232 No
MRCC299_08G03810 mrcc299 name=EuGene.0800010375;pid=60807;prot=eq;tid=60807;transcript=eq - Chr_08 No
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