Gene family  

Sub-families
ORTHO012506 (15 genes in 11 species)
ORTHO017122 (8 genes in 5 species)
ORTHO021969 (5 genes in 5 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM003310 has 40 genes in 18 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G07020 aly name=scaffold_400722.1;pid=901221;prot=eq;tid=932734 - scaffold_4 No
AT2G25670 ath BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT4G32610 ath copper ion binding; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25670.2); Has 53099 Blast hits to 32361 proteins in 2088 species: Archae - 115; Bacteria - 8255; Metazoa - 19472; Fungi - 6714; Plants - 2333; Viruses - 365; Other Eukaryotes - 15845 (source: NCBI BLink).;copper ion binding transcript=eq;prot=eq; - 4 No
BD2G05010 bdi pid=Bradi2g05010.1;tid=Bradi2g05010.1;GeneName=Bradi2g05010;transcript=eq;prot=eq + Bd2 No
BD2G33960 bdi pid=Bradi2g33960.1;tid=Bradi2g33960.1;GeneName=Bradi2g33960;transcript=eq;prot=eq + Bd2 No
BD3G07897 bdi pid=Bradi3g07897.1;tid=Bradi3g07897.1;GeneName=Bradi3g07897;transcript=eq;prot=eq + Bd3 No
CP00023G01270 cpa name=evm.TU.supercontig_23.127;pid=evm.TU.supercontig_23.127;prot=eq;transcript=eq + supercontig_23 No
CP00023G01280 cpa name=evm.TU.supercontig_23.128;pid=evm.TU.supercontig_23.128;prot=eq;transcript=eq + supercontig_23 No
FV2G39190 fve Lipase maturation factor 2 (probable) transcript=eq;prot=eq;pid=gene01042 + LG2 No
GM04G07650 gma 04 pid=16255218;transcript=eq;prot=eq;name=Glyma04g07650.1 - Gm04 No
GM05G08030 gma 05 pid=16258623;transcript=eq;prot=eq;name=Glyma05g08030.1 + Gm05 No
GM06G07750 gma 06 pid=16262096;transcript=eq;prot=eq;name=Glyma06g07750.1 - Gm06 No
GM17G12960 gma 17 pid=16305394;transcript=eq;prot=eq;name=Glyma17g12960.1 - Gm17 No
LJ1G022130 lja prot=eq;transcript=eq;scaffold=CM0760;name=chr1.CM0760.160.nd + chr1 No
MD00G135730 mdo transcript=eq;prot=eq;pid=MDP0000281846;tid=MDP0000281846;contig=MDC005781.213 - MDC005781.213 No
MD00G411360 mdo transcript=eq;prot=eq;pid=MDP0000209651;tid=MDP0000209651;contig=MDC018713.103 - MDC018713.103 No
ME05865G00040 mes PACid=17969888;RNAname=cassava4.1_011741m;GeneName=cassava4.1_011741m.g;transcript=ne;prot=eq + scaffold05865 No
ME05865G00050 mes PACid=17969881;RNAname=cassava4.1_011824m;GeneName=cassava4.1_011824m.g;transcript=eq;prot=eq + scaffold05865 No
MT3G108090 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr3g108090.1; - 3 No
MT3G108100 mtr Unknown Protein (AHRD V1) transcript=eq;prot=eq;pid=Medtr3g108100.1; - 3 No
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