Gene family  

Sub-families
ORTHO043744 (2 genes in 2 species)
ORTHO066166 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM003294 has 40 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G06910 aly name=fgenesh2_kg.4__476__AT2G25640.1;pid=481416;prot=eq;tid=481416 + scaffold_4 No
AL6G11230 aly name=fgenesh1_pg.C_scaffold_6000931;pid=350338;prot=eq;tid=350338 + scaffold_6 No
AL6G25740 aly name=fgenesh2_kg.6__2544__AT5G25520.2;pid=489410;prot=eq;tid=489410 + scaffold_6 No
AT2G25640 ath SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 1179 Blast hits to 1045 proteins in 235 species: Archae - 0; Bacteria - 202; Metazoa - 503; Fungi - 239; Plants - 160; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).;SPOC domain / Transcription elongation factor S-II protein transcript=eq;prot=eq; + 2 No
AT3G29639 ath BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT5G11430 ath SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;SPOC domain / Transcription elongation factor S-II protein transcript=eq;prot=eq; + 5 No
AT5G25520 ath SPOC domain / Transcription elongation factor S-II protein; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;SPOC domain / Transcription elongation factor S-II protein transcript=eq;prot=eq; + 5 No
BD3G07877 bdi pid=Bradi3g07877.1;tid=Bradi3g07877.1;GeneName=Bradi3g07877;transcript=eq;prot=eq + Bd3 No
CP00091G00120 cpa name=evm.TU.supercontig_91.12;pid=evm.TU.supercontig_91.12;prot=eq;transcript=eq - supercontig_91 No
CP00091G00130 cpa name=evm.TU.supercontig_91.13;pid=evm.TU.supercontig_91.13;prot=eq;transcript=eq - supercontig_91 No
CR02G00030 cre name=fgenesh1_est.C_scaffold_7000002;pid=93356;prot=eq;tid=93356;transcript=eq + chromosome_2 Yes
FV2G39250 fve PHD finger protein 3 (probable) transcript=eq;prot=eq;pid=gene01048 - LG2 No
GM04G07580 gma 04 pid=16255207;transcript=eq;prot=eq;name=Glyma04g07580.1 + Gm04 No
GM06G07700 gma 06 pid=16262091;transcript=eq;prot=eq;name=Glyma06g07700.1 + Gm06 No
MD15G005490 mdo transcript=eq;prot=eq;pid=MDP0000143970;tid=MDP0000143970;contig=MDC019532.134 - 15 No
MD15G026030 mdo transcript=eq;prot=eq;pid=MDP0000170246;tid=MDP0000170246;contig=MDC004817.741 + 15 No
ME05005G00130 mes PACid=17986545;RNAname=cassava4.1_013513m;GeneName=cassava4.1_013513m.g;transcript=eq;prot=eq + scaffold05005 No
ME06850G00030 mes PACid=17985361;RNAname=cassava4.1_001493m;GeneName=cassava4.1_001493m.g;transcript=eq;prot=eq + scaffold06850 No
MRCC299_02G05770 mrcc299 name=EuGene.0200010378;pid=56001;prot=eq;tid=56001;transcript=eq + Chr_02 No
MT1G063780 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012921 Spen paralogue and orthologue C-terminal transcript=eq;prot=eq;pid=Medtr1g063780.1; - 1 No
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