Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM003279 has 40 genes in 18 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G19130 aly name=fgenesh2_kg.7__1991__AT4G23060.1;pid=492558;prot=eq;tid=492558 - scaffold_7 No
AT4G23060 ath IQ-domain 22 (IQD22); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 890 Blast hits to 763 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 3; Plants - 728; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink).;IQ-domain 22 transcript=eq;prot=eq; + 4 No
BD5G18767 bdi pid=Bradi5g18767.1;tid=Bradi5g18767.1;GeneName=Bradi5g18767;transcript=eq;prot=eq - Bd5 No
CP00074G00730 cpa name=evm.TU.supercontig_74.73;pid=evm.TU.supercontig_74.73;prot=eq;transcript=eq - supercontig_74 No
CP00107G00210 cpa name=evm.TU.supercontig_107.21;pid=evm.TU.supercontig_107.21;prot=eq;transcript=eq + supercontig_107 No
FV5G01980 fve Putative protein TPRXL (probable) transcript=eq;prot=eq;pid=gene32406 + LG5 No
GM01G42620 gma 01 pid=16246080;transcript=eq;prot=eq;name=Glyma01g42620.1 + Gm01 No
GM05G03450 gma 05 pid=16258182;transcript=eq;prot=eq;name=Glyma05g03450.1 - Gm05 No
GM17G14000 gma 17 pid=16305513;transcript=eq;prot=eq;name=Glyma17g14000.1 - Gm17 No
LJ0G095800 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_030967;name=LjSGA_030967.1 - LjSGA_030967 No
LJ2G027700 lja prot=eq;transcript=eq;scaffold=CM0304;name=chr2.CM0304.730.nc + chr2 No
MD00G264630 mdo transcript=eq;prot=eq;pid=MDP0000126206;tid=MDP0000126206;contig=MDC011348.216 - MDC011348.216 No
MD00G446210 mdo transcript=eq;prot=eq;pid=MDP0000220633;tid=MDP0000220633;contig=MDC020472.171 - MDC020472.171 No
MD01G018860 mdo transcript=eq;prot=eq;pid=MDP0000240376;tid=MDP0000240376;contig=MDC010602.60 + 1 No
MD04G004000 mdo transcript=eq;prot=eq;pid=MDP0000248299;tid=MDP0000248299;contig=MDC003494.462 - 4 No
MD07G018150 mdo transcript=eq;prot=eq;pid=MDP0000626149;tid=MDP0000626149;contig=MDC002995.336 + 7 No
ME06748G00230 mes PACid=17968235;RNAname=cassava4.1_007088m;GeneName=cassava4.1_007088m.g;transcript=eq;prot=eq + scaffold06748 No
ME07035G00290 mes PACid=17977196;RNAname=cassava4.1_006597m;GeneName=cassava4.1_006597m.g;transcript=eq;prot=eq - scaffold07035 No
ME11425G00340 mes PACid=17985573;RNAname=cassava4.1_007168m;GeneName=cassava4.1_007168m.g;transcript=eq;prot=eq - scaffold11425 No
MT1G101330 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR000048 IQ calmodulin-binding region transcript=eq;prot=eq;pid=Medtr1g101330.1; - 1 No
<< previous
1 | 2 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier