Gene family  

Sub-families
ORTHO002535 (32 genes in 23 species)
ORTHO067543 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM003277 has 40 genes in 23 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G35120 aly name=fgenesh2_kg.6__3148__AT4G11960.1;pid=490014;prot=eq;tid=490014 - scaffold_6 No
AL7G19320 aly name=fgenesh2_kg.7__2008__AT4G22890.3;pid=492575;prot=eq;tid=492575 - scaffold_7 No
AT4G11960 ath Encodes PGRL1B, a transmembrane protein present in thylakoids. PGRL1B has a highly homologous isoform PGRL1A encoded by At4g22890. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).;PGR5-like B transcript=eq;prot=eq; - 4 No
AT4G22890 ath Encodes PGRL1A, a transmembrane protein present in thylakoids. PGRL1A has a highly homologous isoform PGRL1B encoded by At4g11960. Plants lacking PGRL1 show perturbation of cyclic electron flow, similar to PGR5-deficient plants. PGRL1 and PGR5 interact physically and associate with PSI (photosystem I).;PGR5-LIKE A transcript=eq;prot=eq; + 4 No
BD1G00940 bdi pid=Bradi1g00940.1;tid=Bradi1g00940.1;GeneName=Bradi1g00940;transcript=eq;prot=eq + Bd1 No
BD1G52550 bdi pid=Bradi1g52550.5;tid=Bradi1g52550.5;GeneName=Bradi1g52550;transcript=eq;prot=eq + Bd1 No
CP00029G00380 cpa name=evm.TU.supercontig_29.38;pid=evm.TU.supercontig_29.38;prot=eq;transcript=eq - supercontig_29 No
CR07G05890 cre name=fgenesh2_kg.C_scaffold_16000015;pid=162423;prot=eq;tid=162423;transcript=eq - chromosome_7 No
FV5G01400 fve PGR5-like protein 1A, chloroplastic, Precursor (putative) transcript=eq;prot=eq;pid=gene32348 + LG5 No
GM01G42360 gma 01 pid=16246047;transcript=eq;prot=eq;name=Glyma01g42360.1 + Gm01 No
GM05G03730 gma 05 pid=16258218;transcript=eq;prot=eq;name=Glyma05g03730.1 - Gm05 No
GM17G14240 gma 17 pid=16305537;transcript=eq;prot=eq;name=Glyma17g14240.1 - Gm17 No
LJ2G027330 lja prot=eq;transcript=eq;scaffold=CM0304;name=chr2.CM0304.360.nc + chr2 No
LJ4G016260 lja prot=eq;transcript=eq;scaffold=CM0126;name=chr4.CM0126.560.nc + chr4 No
MD00G072540 mdo transcript=eq;prot=eq;pid=MDP0000145382;tid=MDP0000145382;contig=MDC003011.105 + MDC003011.105 No
MD00G202780 mdo transcript=eq;prot=eq;pid=MDP0000139113;tid=MDP0000139113;contig=MDC008722.313 - MDC008722.313 No
MD10G003260 mdo transcript=eq;prot=eq;pid=MDP0000149416;tid=MDP0000149416;contig=MDC011274.219 - 10 No
ME07088G00130 mes PACid=17966712;RNAname=cassava4.1_011842m;GeneName=cassava4.1_011842m.g;transcript=ne;prot=eq - scaffold07088 No
MRCC299_12G04770 mrcc299 name=est_cluster_kg.Chr_12__8__3199992:1;pid=109226;prot=eq;tid=109226;transcript=eq + Chr_12 No
MT5G011220 mtr PGR5-like protein 1A, chloroplastic (AHRD V1 ***- Q8H112) transcript=eq;prot=eq;pid=Medtr5g011220.1; - 5 No
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