Gene family  

Sub-families
ORTHO002509 (32 genes in 24 species)
ORTHO035442 (3 genes in 1 species)
ORTHO044121 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003239 has 40 genes in 24 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G31670 aly name=fgenesh2_kg.4__2582__AT2G44040.1;pid=483522;prot=eq;tid=483522 - scaffold_4 No
AL5G30490 aly name=fgenesh2_kg.5__2445__AT3G59890.1;pid=486453;prot=eq;tid=486453 - scaffold_5 No
AT2G44040 ath Dihydrodipicolinate reductase, bacterial/plant; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Dihydrodipicolinate reductase, C-terminal (InterPro:IPR022663), NAD(P)-binding domain (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase, bacterial/plant (InterPro:IPR011770), Dihydrodipicolinate reductase, N-terminal (InterPro:IPR000846); BEST Arabidopsis thaliana protein match is: Dihydrodipicolinate reductase, bacterial/plant (TAIR:AT3G59890.1); Has 3366 Blast hits to 3365 proteins in 1356 species: Archae - 124; Bacteria - 2714; Metazoa - 2; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 447 (source: NCBI BLink).;Dihydrodipicolinate reductase, bacterial/plant transcript=eq;prot=eq; - 2 No
AT3G59890 ath Dihydrodipicolinate reductase, bacterial/plant; FUNCTIONS IN: dihydrodipicolinate reductase activity; INVOLVED IN: oxidation reduction, lysine biosynthetic process via diaminopimelate, diaminopimelate biosynthetic process, metabolic process; LOCATED IN: chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Dihydrodipicolinate reductase, C-terminal (InterPro:IPR022663), NAD(P)-binding domain (InterPro:IPR016040), Dihydrodipicolinate reductase, plant (InterPro:IPR011859), Dihydrodipicolinate reductase, bacterial/plant (InterPro:IPR011770), Dihydrodipicolinate reductase, N-terminal (InterPro:IPR000846); BEST Arabidopsis thaliana protein match is: Dihydrodipicolinate reductase, bacterial/plant (TAIR:AT2G44040.1); Has 3156 Blast hits to 3155 proteins in 1309 species: Archae - 122; Bacteria - 2584; Metazoa - 2; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 371 (source: NCBI BLink).;Dihydrodipicolinate reductase, bacterial/plant transcript=eq;prot=eq; - 3 No
BD1G68380 bdi dihydrodipicolinate reductase activity (Blast2GO) pid=Bradi1g68380.1;tid=Bradi1g68380.1;GeneName=Bradi1g68380;transcript=eq;prot=eq + Bd1 No
BD3G11590 bdi dihydrodipicolinate reductase activity (Blast2GO) pid=Bradi3g11590.1;tid=Bradi3g11590.1;GeneName=Bradi3g11590;transcript=eq;prot=eq - Bd3 No
CP00182G00220 cpa name=evm.TU.supercontig_182.22;pid=evm.TU.supercontig_182.22;prot=eq;transcript=eq - supercontig_182 No
CR14G04010 cre name=pasa_Sanger_mRNA13030;pid=395433;prot=eq;tid=403336;transcript=eq - chromosome_14 No
CR16G01800 cre name=SKA_Chlre2_kg.scaffold_37000022;pid=205760;prot=eq;tid=205765;transcript=eq + chromosome_16 No
FV2G15920 fve Dihydrodipicolinate reductase 1, chloroplastic (DHPR 1), Precursor (similar to) transcript=eq;prot=eq;pid=gene31219 - LG2 No
FV2G16340 fve Dihydrodipicolinate reductase 2, chloroplastic (DHPR 2), Precursor (similar to) transcript=eq;prot=eq;pid=gene31172 + LG2 No
GM07G06610 gma 07 pid=16266426;transcript=eq;prot=eq;name=Glyma07g06610.1 + Gm07 No
GM16G03180 gma 16 pid=16301300;transcript=eq;prot=eq;name=Glyma16g03180.1 + Gm16 No
LJ3G022850 lja prot=eq;transcript=eq;scaffold=CM1468;name=chr3.CM1468.60.nd + chr3 No
LJ3G022890 lja partial;prot=eq;transcript=eq;scaffold=CM1468;name=chr3.CM1468.100.nd + chr3 No
MD00G027360 mdo transcript=eq;prot=eq;pid=MDP0000912127;tid=MDP0000912127;contig=MDC001167.307 - MDC001167.307 No
MD00G053670 mdo transcript=eq;prot=eq;pid=MDP0000263813;tid=MDP0000263813;contig=MDC002228.510 - MDC002228.510 No
MD02G000950 mdo transcript=eq;prot=eq;pid=MDP0000147176;tid=MDP0000147176;contig=MDC000195.390 + 2 No
MD15G007870 mdo transcript=eq;prot=eq;pid=MDP0000265388;tid=MDP0000265388;contig=MDC002228.508 + 15 No
ME04024G00080 mes PACid=17984819;RNAname=cassava4.1_012014m;GeneName=cassava4.1_012014m.g;transcript=eq;prot=eq + scaffold04024 No
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