Gene family  

Sub-families
ORTHO003164 (30 genes in 24 species)
ORTHO023956 (5 genes in 5 species)
ORTHO050682 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (1 gene)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003214 has 40 genes in 24 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 2, showing 20 records out of 40 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL7G04430 aly name=fgenesh2_kg.7__431__AT4G36390.1;pid=490998;prot=eq;tid=490998 + scaffold_7 No
AT4G36390 ath Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink).;Methylthiotransferase transcript=eq;prot=eq; - 4 No
BD4G14840 bdi neuronal Cdc2-like kinase binding (Blast2GO) pid=Bradi4g14840.1;tid=Bradi4g14840.1;GeneName=Bradi4g14840;transcript=eq;prot=eq + Bd4 No
CP00006G01820 cpa name=evm.TU.supercontig_6.183;pid=evm.TU.supercontig_6.183;prot=eq;transcript=eq + supercontig_6 No
CR13G06940 cre name=au.g4974_t1;pid=286691;prot=eq;tid=286698;transcript=eq - chromosome_13 No
CR13G06960 cre name=au.g4976_t1;pid=286693;prot=eq;tid=286700;transcript=eq + chromosome_13 Yes
CR18G00750 cre name=estExt_fgenesh1_pg.C_180048;pid=348019;prot=eq;tid=348026;transcript=eq + scaffold_18 No
FV1G14260 fve CDK5RAP1-like protein (putative) transcript=eq;prot=eq;pid=gene14902 + LG1 No
GM01G37500 gma 01 pid=16245486;transcript=eq;prot=eq;name=Glyma01g37500.1 + Gm01 No
GM11G07790 gma 11 pid=16283051;transcript=eq;prot=eq;name=Glyma11g07790.1 - Gm11 No
LJ2G023010 lja prot=eq;transcript=eq;scaffold=CM0249;name=chr2.CM0249.420.nc + chr2 No
MD00G050560 mdo transcript=eq;prot=eq;pid=MDP0000263615;tid=MDP0000263615;contig=MDC002112.316 + MDC002112.316 Yes
MD02G011900 mdo transcript=eq;prot=eq;pid=MDP0000263107;tid=MDP0000263107;contig=MDC001423.304 + 2 No
MD12G018590 mdo transcript=eq;prot=eq;pid=MDP0000137939;tid=MDP0000137939;contig=MDC012866.391 - 12 No
MD14G015930 mdo transcript=eq;prot=eq;pid=MDP0000202919;tid=MDP0000202919;contig=MDC013624.234 - 14 Yes
MD15G018200 mdo transcript=eq;prot=eq;pid=MDP0000259885;tid=MDP0000259885;contig=MDC016496.170 - 15 No
ME06512G00570 mes PACid=17966203;RNAname=cassava4.1_015930m;GeneName=cassava4.1_015930m.g;transcript=eq;prot=eq + scaffold06512 No
ME07520G02130 mes PACid=17979244;RNAname=cassava4.1_003619m;GeneName=cassava4.1_003619m.g;transcript=eq;prot=eq - scaffold07520 No
MRCC299_02G09460 mrcc299 name=e_gw2.02.173.1;pid=78530;prot=eq;tid=78530;transcript=eq + Chr_02 No
MRCC299_07G04280 mrcc299 name=e_gw2.07.202.1;pid=83736;prot=eq;tid=83736;transcript=eq + Chr_07 No
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