Gene family  

Sub-families
ORTHO002505 (32 genes in 25 species)
ORTHO047393 (2 genes in 2 species)
ORTHO075861 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM003170 has 41 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G27340 aly name=fgenesh2_kg.5__2134__AT3G56990.1;pid=486142;prot=eq;tid=486142 - scaffold_5 No
AT3G56990 ath embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;embryo sac development arrest 7 transcript=eq;prot=eq; - 3 No
BD1G49657 bdi pid=Bradi1g49657.1;tid=Bradi1g49657.1;GeneName=Bradi1g49657;transcript=eq;prot=eq + Bd1 No
CP00005G01740 cpa name=evm.TU.supercontig_5.174;pid=evm.TU.supercontig_5.174;prot=eq;transcript=eq - supercontig_5 No
CP00005G01760 cpa name=evm.TU.supercontig_5.176;pid=evm.TU.supercontig_5.176;prot=eq;transcript=eq - supercontig_5 No
CP01212G00010 cpa name=evm.TU.supercontig_1212.1;pid=evm.TU.supercontig_1212.1;prot=eq;transcript=eq - supercontig_1212 No
CR03G02610 cre name=e_gwW.34.26.1;pid=119598;prot=eq;tid=119598;transcript=eq - chromosome_3 No
FV2G19350 fve Nucleolar protein 10 (probable) transcript=eq;prot=eq;pid=gene27421 + LG2 No
FV3G30000 fve DEAD-box ATP-dependent RNA helicase 40 (similar to) transcript=eq;prot=eq;pid=gene25339 + LG3 No
GM07G12080 gma 07 pid=16267031;transcript=eq;prot=eq;name=Glyma07g12080.1 + Gm07 No
GM09G30130 gma 09 pid=16276688;transcript=eq;prot=eq;name=Glyma09g30130.1 - Gm09 No
LJ0G051310 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_019328;name=LjSGA_019328.2 + LjSGA_019328 No
LJ0G054650 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_020157;name=LjSGA_020157.1 - LjSGA_020157 No
LJ0G152170 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_047759;name=LjSGA_047759.1 + LjSGA_047759 No
LJ0G171690 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_054056;name=LjSGA_054056.1 + LjSGA_054056 No
MD00G224670 mdo transcript=eq;prot=eq;pid=MDP0000944325;tid=MDP0000944325;contig=MDC009716.230 + MDC009716.230 No
MD00G425650 mdo transcript=eq;prot=eq;pid=MDP0000244622;tid=MDP0000244622;contig=MDC019425.240 - MDC019425.240 No
MD00G425680 mdo transcript=eq;prot=eq;pid=MDP0000310179;tid=MDP0000310179;contig=MDC019425.248 - MDC019425.248 No
ME06582G00480 mes PACid=17971961;RNAname=cassava4.1_005796m;GeneName=cassava4.1_005796m.g;transcript=eq;prot=eq - scaffold06582 No
ME06582G00490 mes PACid=17972012;RNAname=cassava4.1_025493m;GeneName=cassava4.1_025493m.g;transcript=eq;prot=eq - scaffold06582 No
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