Gene family 
- Id
- HOM003168
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO002095 (33 genes in 19 species)
ORTHO055865 (2 genes in 1 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (1 gene)
- bdi
- Brachypodium distachyon (1 gene)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (10 genes)
- mes
- Manihot esculenta (1 gene)
- osa
- Oryza sativa ssp. japonica (1 gene)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ppa
- Physcomitrella patens (1 gene)
- ptr
- Populus trichocarpa (2 genes)
- rco
- Ricinus communis (1 gene)
- sbi
- Sorghum bicolor (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (1 gene)
The gene family HOM003168 has 41 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM003168
Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL0G07390 | aly | name=fgenesh1_pg.C_scaffold_302000002;pid=359510;prot=eq;tid=359510 | + | scaffold_302 | No | |
| AL4G35500 | aly | name=fgenesh2_kg.4__2966__AT2G47300.2;pid=483906;prot=eq;tid=483906 | + | scaffold_4 | No | |
| AT2G47300 | ath | ribonuclease Ps; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: tRNA 5'-leader removal, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590), Ribonuclease P/MRP, subunit POP1 (InterPro:IPR009723); Has 329 Blast hits to 272 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 94; Plants - 49; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).;ribonuclease Ps | transcript=eq;prot=eq; | + | 2 | No |
| BD4G09997 | bdi | pid=Bradi4g09997.1;tid=Bradi4g09997.1;GeneName=Bradi4g09997;transcript=eq;prot=eq | + | Bd4 | No | |
| CP00018G00620 | cpa | name=evm.TU.supercontig_18.62;pid=evm.TU.supercontig_18.62;prot=eq;transcript=eq | - | supercontig_18 | No | |
| CP00018G00640 | cpa | name=evm.TU.supercontig_18.64;pid=evm.TU.supercontig_18.64;prot=eq;transcript=eq | - | supercontig_18 | No | |
| FV1G27080 | fve | Ribonucleases P/MRP protein subunit POP1 (hPOP1) (probable) | transcript=eq;prot=eq;pid=gene20459 | - | LG1 | No |
| GM00G00210 | gma | 48 | pid=16242715;transcript=eq;prot=eq;name=Glyma0048s00200.1 | - | scaffold_48 | No |
| GM05G33480 | gma | 05 | pid=16260542;transcript=eq;prot=eq;name=Glyma05g33480.1 | - | Gm05 | No |
| GM09G00200 | gma | 09 | pid=16274270;transcript=eq;prot=eq;name=Glyma09g00200.1 | - | Gm09 | No |
| GM15G29980 | gma | 15 | pid=16299942;transcript=eq;prot=eq;name=Glyma15g29980.1 | - | Gm15 | No |
| GM16G00200 | gma | 16 | pid=16300942;transcript=eq;prot=eq;name=Glyma16g00200.1 | - | Gm16 | No |
| GM16G07720 | gma | 16 | pid=16301817;transcript=eq;prot=eq;name=Glyma16g07720.1 | - | Gm16 | No |
| LJ3G016600 | lja | prot=eq;transcript=eq;scaffold=CM0110;name=chr3.CM0110.460.nd | - | chr3 | No | |
| LJ4G018340 | lja | prot=eq;transcript=eq;scaffold=CM0170;name=chr4.CM0170.60.nd | + | chr4 | No | |
| LJ4G018350 | lja | partial;prot=eq;transcript=eq;scaffold=CM0170;name=chr4.CM0170.70.nd | + | chr4 | No | |
| MD00G106430 | mdo | transcript=eq;prot=eq;pid=MDP0000907819;tid=MDP0000907819;contig=MDC004548.250 | - | MDC004548.250 | No | |
| MD00G157230 | mdo | transcript=eq;prot=eq;pid=MDP0000282990;tid=MDP0000282990;contig=MDC006749.381 | - | MDC006749.381 | No | |
| MD00G198180 | mdo | transcript=eq;prot=eq;pid=MDP0000757992;tid=MDP0000757992;contig=MDC008508.219 | - | MDC008508.219 | No | |
| MD00G241320 | mdo | transcript=eq;prot=eq;pid=MDP0000185752;tid=MDP0000185752;contig=MDC010450.573 | - | MDC010450.573 | No |