Gene family  

Sub-families
ORTHO002095 (33 genes in 19 species)
ORTHO055865 (2 genes in 1 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (1 gene)



The gene family HOM003168 has 41 genes in 19 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G07390 aly name=fgenesh1_pg.C_scaffold_302000002;pid=359510;prot=eq;tid=359510 + scaffold_302 No
AL4G35500 aly name=fgenesh2_kg.4__2966__AT2G47300.2;pid=483906;prot=eq;tid=483906 + scaffold_4 No
AT2G47300 ath ribonuclease Ps; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: tRNA 5'-leader removal, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590), Ribonuclease P/MRP, subunit POP1 (InterPro:IPR009723); Has 329 Blast hits to 272 proteins in 143 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 94; Plants - 49; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).;ribonuclease Ps transcript=eq;prot=eq; + 2 No
BD4G09997 bdi pid=Bradi4g09997.1;tid=Bradi4g09997.1;GeneName=Bradi4g09997;transcript=eq;prot=eq + Bd4 No
CP00018G00620 cpa name=evm.TU.supercontig_18.62;pid=evm.TU.supercontig_18.62;prot=eq;transcript=eq - supercontig_18 No
CP00018G00640 cpa name=evm.TU.supercontig_18.64;pid=evm.TU.supercontig_18.64;prot=eq;transcript=eq - supercontig_18 No
FV1G27080 fve Ribonucleases P/MRP protein subunit POP1 (hPOP1) (probable) transcript=eq;prot=eq;pid=gene20459 - LG1 No
GM00G00210 gma 48 pid=16242715;transcript=eq;prot=eq;name=Glyma0048s00200.1 - scaffold_48 No
GM05G33480 gma 05 pid=16260542;transcript=eq;prot=eq;name=Glyma05g33480.1 - Gm05 No
GM09G00200 gma 09 pid=16274270;transcript=eq;prot=eq;name=Glyma09g00200.1 - Gm09 No
GM15G29980 gma 15 pid=16299942;transcript=eq;prot=eq;name=Glyma15g29980.1 - Gm15 No
GM16G00200 gma 16 pid=16300942;transcript=eq;prot=eq;name=Glyma16g00200.1 - Gm16 No
GM16G07720 gma 16 pid=16301817;transcript=eq;prot=eq;name=Glyma16g07720.1 - Gm16 No
LJ3G016600 lja prot=eq;transcript=eq;scaffold=CM0110;name=chr3.CM0110.460.nd - chr3 No
LJ4G018340 lja prot=eq;transcript=eq;scaffold=CM0170;name=chr4.CM0170.60.nd + chr4 No
LJ4G018350 lja partial;prot=eq;transcript=eq;scaffold=CM0170;name=chr4.CM0170.70.nd + chr4 No
MD00G106430 mdo transcript=eq;prot=eq;pid=MDP0000907819;tid=MDP0000907819;contig=MDC004548.250 - MDC004548.250 No
MD00G157230 mdo transcript=eq;prot=eq;pid=MDP0000282990;tid=MDP0000282990;contig=MDC006749.381 - MDC006749.381 No
MD00G198180 mdo transcript=eq;prot=eq;pid=MDP0000757992;tid=MDP0000757992;contig=MDC008508.219 - MDC008508.219 No
MD00G241320 mdo transcript=eq;prot=eq;pid=MDP0000185752;tid=MDP0000185752;contig=MDC010450.573 - MDC010450.573 No
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