Gene family  

Sub-families
ORTHO002692 (31 genes in 24 species)
ORTHO032423 (3 genes in 3 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (1 gene)



The gene family HOM003166 has 41 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 41 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G07760 aly name=fgenesh2_kg.3__759__AT3G07370.1;pid=478058;prot=eq;tid=478058 - scaffold_3 No
AT3G07370 ath Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment.;carboxyl terminus of HSC70-interacting protein transcript=eq;prot=eq; - 3 No
BD2G39800 bdi U-box, subfamily STIP1 homology and U box-containing protein 1, similar to At CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) pid=Bradi2g39800.1;tid=Bradi2g39800.1;GeneName=Bradi2g39800;transcript=eq;prot=eq + Bd2 No
BD3G13620 bdi U-box, subfamily STIP1 homology and U box-containing protein 1, similar to At CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) pid=Bradi3g13620.1;tid=Bradi3g13620.1;GeneName=Bradi3g13620;transcript=eq;prot=eq + Bd3 No
CP00008G00920 cpa name=evm.TU.supercontig_8.92;pid=evm.TU.supercontig_8.92;prot=eq;transcript=eq + supercontig_8 No
CR03G07780 cre name=Chlre2_kg.scaffold_14000031;pid=145398;prot=eq;tid=145398;transcript=eq - chromosome_3 No
CR11G02640 cre name=kg.chromosome_11_#_348_#_852679:2;pid=312845;prot=eq;tid=312852;transcript=eq - chromosome_11 No
FV2G13700 fve E3 ubiquitin-protein ligase CHIP (AtCHIP) (putative) transcript=eq;prot=eq;pid=gene17424 + LG2 No
GM00G00640 gma 220 pid=16246452;transcript=eq;prot=eq;name=Glyma0220s00210.1 + scaffold_220 No
GM03G22210 gma 03 pid=16252030;transcript=eq;prot=eq;name=Glyma03g22210.1 - Gm03 No
GM16G09930 gma 16 pid=16302036;transcript=eq;prot=eq;name=Glyma16g09930.1 + Gm16 No
MD00G041260 mdo transcript=eq;prot=eq;pid=MDP0000319763;tid=MDP0000319763;contig=MDC001758.144 + MDC001758.144 No
MD00G469840 mdo transcript=eq;prot=eq;pid=MDP0000132426;tid=MDP0000132426;contig=MDC021825.93 + MDC021825.93 No
MD05G016700 mdo transcript=eq;prot=eq;pid=MDP0000280877;tid=MDP0000280877;contig=MDC007990.240 - 5 No
ME06158G00370 mes PACid=17986980;RNAname=cassava4.1_013384m;GeneName=cassava4.1_013384m.g;transcript=eq;prot=eq + scaffold06158 No
ME07036G00200 mes PACid=17982570;RNAname=cassava4.1_013409m;GeneName=cassava4.1_013409m.g;transcript=eq;prot=eq + scaffold07036 No
MRCC299_04G07820 mrcc299 name=EuGene.0400010796;pid=58267;prot=eq;tid=58267;transcript=eq + Chr_04 No
MRCC299_06G07000 mrcc299 name=EuGene.0600010717;pid=59715;prot=eq;tid=59715;transcript=eq + Chr_06 No
MRCC299_10G02410 mrcc299 name=e_gw2.10.370.1;pid=85809;prot=eq;tid=85809;transcript=eq + Chr_10 No
MRCC299_15G03580 mrcc299 name=EuGene.1500010360;pid=64639;prot=eq;tid=64639;transcript=eq + Chr_15 Yes
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