Gene family  

Sub-families
ORTHO008998 (21 genes in 19 species)
ORTHO057301 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
gma
Glycine max (1 gene)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (7 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM003125 has 42 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G32230 aly name=fgenesh1_pm.C_scaffold_3002395;pid=319379;prot=eq;tid=319379 - scaffold_3 No
ATMG00070 ath NADH dehydrogenase subunit 9;NADH dehydrogenase subunit 9 transcript=eq;prot=eq; - mitochondrial No
ATMG00570 ath encodes a protein of unknown function. The transcript has extensive RNA editing at the 3' end. Protein has orthologous in other plants and sequence is similar to E. coli ORFs orf154 and orf131, both of unknown function. So far, similar proteins are found only in plants and prokaryotes.;Sec-independent periplasmic protein translocase transcript=eq;prot=eq; + mitochondrial No
CP00038G00030 cpa name=evm.TU.supercontig_38.3;pid=evm.TU.supercontig_38.3;prot=eq;transcript=eq + supercontig_38 No
CR07G03190 cre name=estExt_fgenesh2_kg.C_100127;pid=182980;prot=eq;tid=182980;transcript=eq + chromosome_7 No
GM00G00945 gma 1246 pid=16285810;transcript=eq;prot=eq;name=Glyma1246s00210.1 + scaffold_1246 No
LJ0G001390 lja prot=eq;transcript=eq;scaffold=LjSGA_001057;name=LjSGA_001057.3 + LjSGA_001057 No
LJ0G010640 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_008141;name=LjSGA_008141.1 + LjSGA_008141 No
LJ0G372880 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_134701;name=LjSGA_134701.1.1 - LjSGA_134701 No
LJ4G008380 lja partial;prot=eq;transcript=eq;scaffold=CM0227;name=chr4.CM0227.290.nd + chr4 No
LJ4G012800 lja partial;prot=eq;transcript=eq;scaffold=CM0131;name=chr4.CM0131.450.nd + chr4 No
MD11G027240 mdo transcript=eq;prot=eq;pid=MDP0000333903;tid=MDP0000333903;contig=MDC001666.329 - 11 No
MD15G024020 mdo transcript=eq;prot=eq;pid=MDP0000359085;tid=MDP0000359085;contig=MDC003792.381 - 15 No
MRCC299_MG00530 mrcc299 mtt2;unknown protein;protein_id=ACO55606.1; - mitochondrial No
MRCC299_MG00790 mrcc299 nad9;NADH dehydrogenase subunit 9;protein_id=ACO55621.1; - mitochondrial No
MT1G005420 mtr Transport membrane protein (AHRD V1 **-- Q0GR93_ZEALU); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase transcript=eq;prot=eq;pid=Medtr1g005420.1; - 1 No
MT1G005510 mtr Transport membrane protein (AHRD V1 **-* Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase transcript=eq;prot=eq;pid=Medtr1g005510.1; + 1 No
MT1G005640 mtr NADH-ubiquinone oxidoreductase (Fragment) (AHRD V1 ***- A7KNI3_ARATH); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit transcript=eq;prot=eq;pid=Medtr1g005640.1; + 1 No
MT1G005890 mtr Transport membrane protein (AHRD V1 **-- Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase transcript=eq;prot=eq;pid=Medtr1g005890.1; - 1 No
MT1G006820 mtr Transport membrane protein (AHRD V1 **-- Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase transcript=eq;prot=eq;pid=Medtr1g006820.1; + 1 No
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