Gene family 
- Id
- HOM003125
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO008998 (21 genes in 19 species)
ORTHO057301 (2 genes in 2 species)
View all sub-families (2)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (1 gene)
- ath
- Arabidopsis thaliana (2 genes)
- cpa
- Carica papaya (1 gene)
- cre
- Chlamydomonas reinhardtii (1 gene)
- gma
- Glycine max (1 gene)
- lja
- Lotus japonicus (5 genes)
- mdo
- Malus domestica (2 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (7 genes)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (2 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (2 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (1 gene)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (1 gene)
- zma
- Zea mays (3 genes)
The gene family HOM003125 has 42 genes in 20 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
View
- ...the multiple sequence alignment of the homologous gene family.
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
- ...the functional annotation associated with this gene family.
Index of genes with 1 constraints:
- gene family : HOM003125
Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G32230 | aly | name=fgenesh1_pm.C_scaffold_3002395;pid=319379;prot=eq;tid=319379 | - | scaffold_3 | No | |
| ATMG00070 | ath | NADH dehydrogenase subunit 9;NADH dehydrogenase subunit 9 | transcript=eq;prot=eq; | - | mitochondrial | No |
| ATMG00570 | ath | encodes a protein of unknown function. The transcript has extensive RNA editing at the 3' end. Protein has orthologous in other plants and sequence is similar to E. coli ORFs orf154 and orf131, both of unknown function. So far, similar proteins are found only in plants and prokaryotes.;Sec-independent periplasmic protein translocase | transcript=eq;prot=eq; | + | mitochondrial | No |
| CP00038G00030 | cpa | name=evm.TU.supercontig_38.3;pid=evm.TU.supercontig_38.3;prot=eq;transcript=eq | + | supercontig_38 | No | |
| CR07G03190 | cre | name=estExt_fgenesh2_kg.C_100127;pid=182980;prot=eq;tid=182980;transcript=eq | + | chromosome_7 | No | |
| GM00G00945 | gma | 1246 | pid=16285810;transcript=eq;prot=eq;name=Glyma1246s00210.1 | + | scaffold_1246 | No |
| LJ0G001390 | lja | prot=eq;transcript=eq;scaffold=LjSGA_001057;name=LjSGA_001057.3 | + | LjSGA_001057 | No | |
| LJ0G010640 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_008141;name=LjSGA_008141.1 | + | LjSGA_008141 | No | |
| LJ0G372880 | lja | partial;prot=eq;transcript=eq;scaffold=LjSGA_134701;name=LjSGA_134701.1.1 | - | LjSGA_134701 | No | |
| LJ4G008380 | lja | partial;prot=eq;transcript=eq;scaffold=CM0227;name=chr4.CM0227.290.nd | + | chr4 | No | |
| LJ4G012800 | lja | partial;prot=eq;transcript=eq;scaffold=CM0131;name=chr4.CM0131.450.nd | + | chr4 | No | |
| MD11G027240 | mdo | transcript=eq;prot=eq;pid=MDP0000333903;tid=MDP0000333903;contig=MDC001666.329 | - | 11 | No | |
| MD15G024020 | mdo | transcript=eq;prot=eq;pid=MDP0000359085;tid=MDP0000359085;contig=MDC003792.381 | - | 15 | No | |
| MRCC299_MG00530 | mrcc299 | mtt2;unknown protein;protein_id=ACO55606.1; | - | mitochondrial | No | |
| MRCC299_MG00790 | mrcc299 | nad9;NADH dehydrogenase subunit 9;protein_id=ACO55621.1; | - | mitochondrial | No | |
| MT1G005420 | mtr | Transport membrane protein (AHRD V1 **-- Q0GR93_ZEALU); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase | transcript=eq;prot=eq;pid=Medtr1g005420.1; | - | 1 | No |
| MT1G005510 | mtr | Transport membrane protein (AHRD V1 **-* Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase | transcript=eq;prot=eq;pid=Medtr1g005510.1; | + | 1 | No |
| MT1G005640 | mtr | NADH-ubiquinone oxidoreductase (Fragment) (AHRD V1 ***- A7KNI3_ARATH); contains Interpro domain(s) IPR001268 NADH:ubiquinone oxidoreductase, 30 kDa subunit | transcript=eq;prot=eq;pid=Medtr1g005640.1; | + | 1 | No |
| MT1G005890 | mtr | Transport membrane protein (AHRD V1 **-- Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase | transcript=eq;prot=eq;pid=Medtr1g005890.1; | - | 1 | No |
| MT1G006820 | mtr | Transport membrane protein (AHRD V1 **-- Q1KK99_MAIZE); contains Interpro domain(s) IPR002033 Sec-independent periplasmic protein translocase | transcript=eq;prot=eq;pid=Medtr1g006820.1; | + | 1 | No |