Gene family  

Sub-families
No subfamilies present
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (1 gene)



The gene family HOM003100 has 42 genes in 21 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G40880 aly name=scaffold_604223.1;pid=912166;prot=eq;tid=943679 - scaffold_6 No
AT4G00755 ath F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 80 Blast hits to 80 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 57; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).;F-box family protein transcript=eq;prot=eq; + 4 No
BD1G00497 bdi pid=Bradi1g00497.1;tid=Bradi1g00497.1;GeneName=Bradi1g00497;transcript=eq;prot=eq - Bd1 No
BD1G76670 bdi pid=Bradi1g76670.1;tid=Bradi1g76670.1;GeneName=Bradi1g76670;transcript=eq;prot=eq - Bd1 No
BD1G77410 bdi pid=Bradi1g77410.1;tid=Bradi1g77410.1;GeneName=Bradi1g77410;transcript=eq;prot=eq - Bd1 No
BD1G77420 bdi pid=Bradi1g77420.1;tid=Bradi1g77420.1;GeneName=Bradi1g77420;transcript=eq;prot=eq - Bd1 No
CP00018G01850 cpa name=evm.TU.supercontig_18.185;pid=evm.TU.supercontig_18.185;prot=eq;transcript=eq + supercontig_18 No
CP00107G00110 cpa name=evm.TU.supercontig_107.11;pid=evm.TU.supercontig_107.11;prot=eq;transcript=eq - supercontig_107 No
FV7G09470 fve Putative protein TPRXL (probable) transcript=eq;prot=eq;pid=gene18885 + LG7 No
GM09G26950 gma 09 pid=16276359;transcript=eq;prot=eq;name=Glyma09g26950.1 + Gm09 No
GM09G40070 gma 09 pid=16277829;transcript=eq;prot=eq;name=Glyma09g40070.1 - Gm09 No
GM16G32240 gma 16 pid=16303599;transcript=eq;prot=eq;name=Glyma16g32240.1 + Gm16 No
GM18G46130 gma 18 pid=16310596;transcript=eq;prot=eq;name=Glyma18g46130.1 + Gm18 No
LJ0G161230 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_050616;name=LjSGA_050616.1 + LjSGA_050616 No
MD00G082410 mdo transcript=eq;prot=eq;pid=MDP0000156161;tid=MDP0000156161;contig=MDC003487.406 - MDC003487.406 No
MD00G301390 mdo transcript=eq;prot=eq;pid=MDP0000138173;tid=MDP0000138173;contig=MDC012820.244 + MDC012820.244 No
MD07G009970 mdo transcript=eq;prot=eq;pid=MDP0000945689;tid=MDP0000945689;contig=MDC012768.337 + 7 No
ME03942G00510 mes PACid=17976239;RNAname=cassava4.1_010310m;GeneName=cassava4.1_010310m.g;transcript=eq;prot=eq - scaffold03942 No
ME04882G00310 mes PACid=17963286;RNAname=cassava4.1_010260m;GeneName=cassava4.1_010260m.g;transcript=eq;prot=eq + scaffold04882 No
ME11425G00400 mes PACid=17985586;RNAname=cassava4.1_009400m;GeneName=cassava4.1_009400m.g;transcript=eq;prot=eq + scaffold11425 No
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