Gene family  

Sub-families
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Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM003067 has 42 genes in 21 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18180 aly name=fgenesh2_kg.1__1885__AT1G17280.1;pid=471931;prot=eq;tid=471931 - scaffold_1 No
AL8G14620 aly name=fgenesh2_kg.8__925__AT5G50430.1;pid=495109;prot=eq;tid=495109 - scaffold_8 No
AT1G17280 ath ubiquitin-conjugating enzyme 34 (UBC34); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 33 (TAIR:AT5G50430.2); Has 7599 Blast hits to 7596 proteins in 375 species: Archae - 0; Bacteria - 0; Metazoa - 3285; Fungi - 1587; Plants - 1489; Viruses - 20; Other Eukaryotes - 1218 (source: NCBI BLink).;ubiquitin-conjugating enzyme 34 transcript=eq;prot=eq; - 1 No
AT5G50430 ath ubiquitin-conjugating enzyme 33 (UBC33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 34 (TAIR:AT1G17280.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;ubiquitin-conjugating enzyme 33 transcript=eq;prot=eq; - 5 No
BD1G46730 bdi ISG15 ligase activity, ubiquitin-protein ligase activity (Blast2GO) pid=Bradi1g46730.1;tid=Bradi1g46730.1;GeneName=Bradi1g46730;transcript=eq;prot=eq + Bd1 No
CP00025G01980 cpa name=evm.TU.supercontig_25.198;pid=evm.TU.supercontig_25.198;prot=eq;transcript=eq + supercontig_25 No
CP00025G01990 cpa name=evm.TU.supercontig_25.199;pid=evm.TU.supercontig_25.199;prot=eq;transcript=eq + supercontig_25 No
FV0G17080 fve Probable ubiquitin carrier protein E2 33 (putative) transcript=eq;prot=eq;pid=gene05473 - scf0513160 No
FV0G17120 fve RNA-directed RNA polymerase nsP4 (probable) transcript=eq;prot=eq;pid=gene05477 + scf0513160 No
GM07G05170 gma 07 pid=16266247;transcript=eq;prot=eq;name=Glyma07g05170.1 + Gm07 No
GM07G05180 gma 07 pid=16266249;transcript=eq;prot=eq;name=Glyma07g05180.1 + Gm07 No
GM16G01680 gma 16 pid=16301122;transcript=eq;prot=eq;name=Glyma16g01680.1 + Gm16 No
GM16G01690 gma 16 pid=16301125;transcript=eq;prot=eq;name=Glyma16g01690.1 + Gm16 No
LJ0G004840 lja prot=eq;transcript=eq;scaffold=LjSGA_005221;name=LjSGA_005221.1 + LjSGA_005221 No
MD09G016490 mdo transcript=eq;prot=eq;pid=MDP0000197208;tid=MDP0000197208;contig=MDC013237.128 - 9 No
MD16G006460 mdo transcript=eq;prot=eq;pid=MDP0000225134;tid=MDP0000225134;contig=MDC022251.203 - 16 No
ME05875G01600 mes PACid=17973047;RNAname=cassava4.1_015231m;GeneName=cassava4.1_015231m.g;transcript=eq;prot=eq + scaffold05875 No
ME05875G01610 mes PACid=17973049;RNAname=cassava4.1_031866m;GeneName=cassava4.1_031866m.g;transcript=eq;prot=eq + scaffold05875 No
ME10504G00260 mes PACid=17970190;RNAname=cassava4.1_025388m;GeneName=cassava4.1_025388m.g;transcript=eq;prot=eq - scaffold10504 No
MT8G023380 mtr Ubiquitin carrier protein E2 34 (AHRD V1 **** Q9SHI7); contains Interpro domain(s) IPR000608 Ubiquitin-conjugating enzyme, E2 transcript=eq;prot=eq;pid=Medtr8g023380.1; + 8 No
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