Gene family  

Sub-families
ORTHO002833 (31 genes in 25 species)
ORTHO045581 (2 genes in 2 species)
ORTHO066018 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (1 gene)



The gene family HOM003063 has 42 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G39790 aly name=scaffold_304221.1;pid=900251;prot=eq;tid=931764 + scaffold_3 No
AL7G05530 aly name=scaffold_700583.1;pid=912841;prot=eq;tid=944354 - scaffold_7 No
AL7G23720 aly name=fgenesh2_kg.7__2403__AT4G18905.1;pid=492970;prot=eq;tid=492970 - scaffold_7 No
AL7G23730 aly name=scaffold_702522.1;pid=914780;prot=eq;tid=946293 - scaffold_7 No
AT4G18900 ath Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 4 No
AT4G18905 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18900.1).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 4 No
AT4G35370 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18905.1); Has 35855 Blast hits to 22159 proteins in 637 species: Archae - 32; Bacteria - 3793; Metazoa - 14224; Fungi - 8619; Plants - 4898; Viruses - 0; Other Eukaryotes - 4289 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; + 4 No
BD2G59226 bdi pid=Bradi2g59226.1;tid=Bradi2g59226.1;GeneName=Bradi2g59226;transcript=eq;prot=eq - Bd2 No
CP00089G00680 cpa name=evm.TU.supercontig_89.68;pid=evm.TU.supercontig_89.68;prot=eq;transcript=eq + supercontig_89 No
CR01G07230 cre name=e_gwW.1.92.1;pid=116342;prot=eq;tid=116342;transcript=eq - chromosome_1 No
FV1G14650 fve Cyclin-dependent kinase inhibitor 4 (probable) transcript=eq;prot=eq;pid=gene14939 + LG1 Yes
FV1G14670 fve hypothetical protein transcript=eq;prot=eq;pid=gene14941 + LG1 No
FV5G24570 fve Periodic tryptophan protein 1 homolog (probable) transcript=eq;prot=eq;pid=gene26940 - LG5 No
GM02G47740 gma 02 pid=16250546;transcript=eq;prot=eq;name=Glyma02g47740.1 - Gm02 No
GM14G00890 gma 14 pid=16293907;transcript=eq;prot=eq;name=Glyma14g00890.1 + Gm14 No
LJ2G039560 lja prot=eq;transcript=eq;scaffold=CM0191;name=chr2.CM0191.370.nc - chr2 No
MD00G300660 mdo transcript=eq;prot=eq;pid=MDP0000930755;tid=MDP0000930755;contig=MDC012791.138 - MDC012791.138 No
MD14G009540 mdo transcript=eq;prot=eq;pid=MDP0000150861;tid=MDP0000150861;contig=MDC012191.253 + 14 No
ME07520G02060 mes PACid=17979318;RNAname=cassava4.1_006873m;GeneName=cassava4.1_006873m.g;transcript=eq;prot=eq - scaffold07520 No
ME08974G00030 mes PACid=17966563;RNAname=cassava4.1_006187m;GeneName=cassava4.1_006187m.g;transcript=eq;prot=eq - scaffold08974 No
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