Gene family  

Sub-families
ORTHO004505 (27 genes in 25 species)
ORTHO049636 (2 genes in 2 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (1 gene)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (2 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (2 genes)
rco
Ricinus communis (1 gene)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (1 gene)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM003056 has 42 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 42 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G27290 aly name=fgenesh2_kg.5__2129__AT3G56940.1;pid=486137;prot=eq;tid=486137 + scaffold_5 No
AT3G56940 ath Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.;dicarboxylate diiron protein, putative (Crd1) transcript=eq;prot=eq; + 3 No
BD2G10770 bdi pid=Bradi2g10770.1;tid=Bradi2g10770.1;GeneName=Bradi2g10770;transcript=eq;prot=eq + Bd2 No
BD4G17420 bdi pid=Bradi4g17420.1;tid=Bradi4g17420.1;GeneName=Bradi4g17420;transcript=eq;prot=eq + Bd4 No
CP00092G00570 cpa name=evm.TU.supercontig_92.57;pid=evm.TU.supercontig_92.57;prot=eq;transcript=eq - supercontig_92 No
CR07G07040 cre name=estExt_fgenesh2_kg.C_160044;pid=183476;prot=eq;tid=183476;transcript=eq - chromosome_7 No
CR12G05430 cre name=estExt_fgenesh2_kg.C_110066;pid=183048;prot=eq;tid=183048;transcript=eq - chromosome_12 No
FV0G49700 fve ATP-dependent RNA helicase DBP5 (probable) transcript=eq;prot=eq;pid=gene24362 + scf0513000 Yes
FV2G21230 fve hypothetical protein transcript=eq;prot=eq;pid=gene27603 - LG2 Yes
FV4G02060 fve cGMP-dependent protein kinase 2 (CGK 2) (probable) transcript=eq;prot=eq;pid=gene29618 - LG4 Yes
FV6G26670 fve Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic (Mg-protoporphyrin IX monomethyl ester oxidative cyclase), Precursor (similar to) transcript=eq;prot=eq;pid=gene17933 - LG6 No
GM03G27380 gma 03 pid=16252496;transcript=eq;prot=eq;name=Glyma03g27380.1 - Gm03 No
GM19G30350 gma 19 pid=16313284;transcript=eq;prot=eq;name=Glyma19g30350.1 - Gm19 No
LJ1G043090 lja prot=eq;transcript=eq;scaffold=CM0098;name=chr1.CM0098.300.nc + chr1 No
MD00G004590 mdo transcript=eq;prot=eq;pid=MDP0000266919;tid=MDP0000266919;contig=MDC000173.221 + MDC000173.221 No
MD00G004610 mdo transcript=eq;prot=eq;pid=MDP0000269729;tid=MDP0000269729;contig=MDC000173.270 - MDC000173.270 No
MD00G091920 mdo transcript=eq;prot=eq;pid=MDP0000276812;tid=MDP0000276812;contig=MDC003930.740 + MDC003930.740 No
MD00G093640 mdo transcript=eq;prot=eq;pid=MDP0000735372;tid=MDP0000735372;contig=MDC004000.426 + MDC004000.426 No
MD00G151320 mdo transcript=eq;prot=eq;pid=MDP0000184407;tid=MDP0000184407;contig=MDC006511.509 + MDC006511.509 No
MD00G192110 mdo transcript=eq;prot=eq;pid=MDP0000602932;tid=MDP0000602932;contig=MDC008244.353 - MDC008244.353 No
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