Gene family  

Sub-families
ORTHO001816 (35 genes in 23 species)
ORTHO023188 (5 genes in 5 species)
View all sub-families (2)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (2 genes)
mes
Manihot esculenta (1 gene)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (2 genes)



The gene family HOM003017 has 43 genes in 23 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 3, showing 20 records out of 43 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G02120 aly name=fgenesh2_kg.3__238__AT3G02910.1;pid=477537;prot=eq;tid=477537 + scaffold_3 No
AL8G01460 aly name=scaffold_800156.1;pid=916756;prot=eq;tid=948269 - scaffold_8 No
AT3G02910 ath AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G46720.1); Has 320 Blast hits to 319 proteins in 102 species: Archae - 4; Bacteria - 64; Metazoa - 146; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).;AIG2-like (avirulence induced gene) family protein transcript=eq;prot=eq; + 3 No
AT5G46720 ath AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT3G02910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;AIG2-like (avirulence induced gene) family protein transcript=eq;prot=eq; + 5 No
BD1G01080 bdi pid=Bradi1g01080.1;tid=Bradi1g01080.1;GeneName=Bradi1g01080;transcript=eq;prot=eq + Bd1 No
BD4G31342 bdi pid=Bradi4g31342.1;tid=Bradi4g31342.1;GeneName=Bradi4g31342;transcript=eq;prot=eq - Bd4 No
CP00043G00940 cpa name=evm.TU.supercontig_43.94;pid=evm.TU.supercontig_43.94;prot=eq;transcript=eq - supercontig_43 No
FV5G29490 fve UPF0131 protein At3g02910 (probable) transcript=eq;prot=eq;pid=gene10490 + LG5 No
GM01G02200 gma 01 pid=16243127;transcript=eq;prot=eq;name=Glyma01g02200.1 + Gm01 No
GM11G11700 gma 11 pid=16283537;transcript=eq;prot=eq;name=Glyma11g11700.1 + Gm11 No
GM12G01820 gma 12 pid=16286025;transcript=eq;prot=eq;name=Glyma12g01820.1 - Gm12 No
LJ3G035800 lja prot=eq;transcript=eq;scaffold=CM0127;name=chr3.CM0127.130.nc - chr3 No
MD00G505690 mdo transcript=eq;prot=eq;pid=MDP0000318809;tid=MDP0000318809;contig=MDC029133.14 + MDC029133.14 No
MD07G021480 mdo transcript=eq;prot=eq;pid=MDP0000189482;tid=MDP0000189482;contig=MDC010985.189 + 7 No
ME03614G01170 mes PACid=17965541;RNAname=cassava4.1_014349m;GeneName=cassava4.1_014349m.g;transcript=eq;prot=eq + scaffold03614 No
MRCC299_10G03140 mrcc299 name=est_cluster_kg.Chr_10__85__3202810:1;pid=109042;prot=eq;tid=109042;transcript=eq - Chr_10 No
MT5G030280 mtr Unknown Protein (AHRD V1); contains Interpro domain(s) IPR013024 Butirosin biosynthesis, BtrG-like transcript=eq;prot=eq;pid=Medtr5g030280.1; + 5 No
OL05G03490 olu NULL name=eugene.0500010354,pid=31817,prot=eq,tid=31817 - Chr_5 No
OS03G63700 osa AIG2%2Dlike family domain containing protein, expressed transcript=eq;prot=eq; + 3 No
OS11G04420 osa AIG2%2Dlike family domain containing protein, expressed transcript=eq;prot=eq; - 11 No
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